Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3929 ATGGGTTGGCTTAGCAAATTTTTCAAAGGCTCCGACCAAAAGATTTCGGAAGGGCATTACCATTCGTATTATAACGGGGATGCGGATTCTTACTTGCCATCGACGTCTGGTGTAACAAACGATGTTTGGCCTGAGAATGAGAACGAAGATATAGATCGTGCCATTGCATTATCTCTGGCAGAGCAAAATCATAGAGGAAACCATGTAAATGACTACAGATCTCAATTAGAAGAAGATGAACAACTTGCCAGAGCTATAGAAGAAAGCCTAAATCTAGAGTCTCCTCCGAAATATGGAAACGAGAACATGTATCAACCCCATCCGGCGGTTCCAATTCCAGTACCAGTGTATTTCCCAATGGGATCAAGTTTTTTGCATAATAGGATTTGTGCTGGCTGCCATACTGAGATTGGTTATGGACGATACCTAAATTGTTTGAATGCTTTCTGGCATCCTGAATGCTTCCGCTGTCATGCTTGCAACCTACCGATCTCTGATTATGAGTTCTCCACGTCGGGAAATTACCCTTACCATAAATCATGCTATAAGGAAAGCTACCATCCAAAATGTGATGTCTGCAAGCATTTCATTCCAACAAACCCTGCTGGTCTTATTGAATATAGGGCACATCCATTCTGGGTCCAAAAATATTGCCCTTCTCATGAACACGATAACACTCCAAGATGTTGCAGCTGTGAGCGAATGGAGCCACGAGAGACTGGATATATCGGTCTTAATGATGGCCGGAAGCTTTGCTTAGAGTGCCTTGACTCTGCAATCATGGATACAAGCGAATGCCAACCGCTTTATGTTGATATACAAAGATTTTATGAAAGCTTAGACATGAAATTGGAGCAGCAAATTCCACTTCTCTTGGTTGAAAGACAAGCCCTGAATGAAGCAAGAGAGGGGGAGAAGCATGGTCACTATCACATGCCAGAAACTCGAGGACTCTGCCTTTCGGAAGAGCAGACGATCAGCAGCATCTCGAGACGACCGAGACTTGGGGCAGGAAATAGAGCGGTCGACATGAGAACACAATCATACAAATTGACCAGACGTTGCGATGTGACGGCAATTCTCATTTTATTCGGACTTCCAAGATTGCTTACTGGATCGATCCTAGCTCACGAGATGATGCATGCATGGCTGCGGCTTAAAGGCTACCGAACCCTAAGTCAAAACGTCGAAGAAGGTATATGTCAGGTTATGGCATACATGTGGTTGCATTCTGAACTCACTTCGGCGTCAGCCTCATCCTCATCTTCAACATCTAGAAAAGGGAAAAGACCCCCTTTTGAGATGAAGCTCGGCGAGTTCTTCAAGCACCAGATTGAATCCGACATCTCGCCAGTTTACGGAGACGGGTTTAGGGCAGGTCACCAAGCAGTGCAGAAGTATGGTCTTCAGAAGACCCTAAACCATATATGGATGACTGGTACTTTTCCATTTTGA 1455 0.4454 MGWLSKFFKGSDQKISEGHYHSYYNGDADSYLPSTSGVTNDVWPENENEDIDRAIALSLAEQNHRGNHVNDYRSQLEEDEQLARAIEESLNLESPPKYGNENMYQPHPAVPIPVPVYFPMGSSFLHNRICAGCHTEIGYGRYLNCLNAFWHPECFRCHACNLPISDYEFSTSGNYPYHKSCYKESYHPKCDVCKHFIPTNPAGLIEYRAHPFWVQKYCPSHEHDNTPRCCSCERMEPRETGYIGLNDGRKLCLECLDSAIMDTSECQPLYVDIQRFYESLDMKLEQQIPLLLVERQALNEAREGEKHGHYHMPETRGLCLSEEQTISSISRRPRLGAGNRAVDMRTQSYKLTRRCDVTAILILFGLPRLLTGSILAHEMMHAWLRLKGYRTLSQNVEEGICQVMAYMWLHSELTSASASSSSSTSRKGKRPPFEMKLGEFFKHQIESDISPVYGDGFRAGHQAVQKYGLQKTLNHIWMTGTFPF* 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3929 484 Coils Coil 69 89 - -
Amo16g3929 484 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 126 155 - -
Amo16g3929 484 PANTHER PROTEIN DA1-LIKE 1 484 - -
Amo16g3929 484 ProSiteProfiles LIM domain profile. 128 188 IPR001781 -
Amo16g3929 484 CDD LIM_DA1 130 182 - -
Amo16g3929 484 Pfam Protein DA1 280 478 IPR022087 -
Amo16g3929 484 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 77 96 IPR003903 -
Amo16g3929 484 Pfam LIM domain 130 184 IPR001781 -
Amo16g3929 484 PANTHER PROTEIN DA1-RELATED 2 1 484 IPR045218 -
Amo16g3929 484 Pfam Ubiquitin interaction motif 47 62 IPR003903 -
Amo16g3929 484 Pfam Ubiquitin interaction motif 77 90 IPR003903 -
Amo16g3929 484 ProSitePatterns LIM zinc-binding domain signature. 130 164 IPR001781 -
Amo16g3929 484 SMART uim 46 65 IPR003903 -
Amo16g3929 484 SMART uim 77 96 IPR003903 -
Amo16g3929 484 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 46 65 IPR003903 -
Amo16g3929 484 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 156 211 - -
Amo16g3929 484 Gene3D Cysteine Rich Protein 123 189 - -
Amo16g3929 484 SMART lim_4 129 181 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g3929 Amo-Chr16 151094993 151101831 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Amo16g3929 DA1-like 7e-96 CL0126
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g3929 16 151094993 151101831 Amo16g3929 16 151094993 151101831 ECH