Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3910 ATGTTGACAAATTCTCTTCCATCAATAATGCAAACCTTGTTAGCATCATCACCCCCTAAATTTCAAGGACCAGATTTGTCCTTAAACATAAGCCCTCCATGTGTTAGTGTCTCAGATTCCGAAAACAACAACCTCAACAACAACAACAACATGAACATGAACATGAACATGAACATGTTCCTAAGTAGTAGGAAGAAAATTGTTTACAATGATATAAGTACTAGTTCAACTACTTCAGATTCAGGTGGTAGTAGTTGTGGAAGTGCAAGTGACTTAAGCCATGAAAACAACAACCTTCTTCATCATCAACCTACATTGACCTTAGATTTGAATAATTACCATCATCATCATCAAGGACTTTCTAGAAGCTTCAATAATCACCACCATTTCCAACCTCAAATCTATGGCCGCGAGTTCAAGAGAAGCTCCAGGGTCATTAATGGAGTCAAGAGGAGCGTGAGAGCACCTAGGATGAGATGGACAACAACCCTCCATGCCCATTTTGTTCATGCTGTTCAACTCCTTGGTGGCCATGAAAGGGCAACACCAAAGTCAGTTTTAGAGTTAATGAATGTTAAGGATCTAACCCTAGCACACGTCAAAAGTCACTTACAGATGTATAGAACAGTGAAGAGCACTGACAAAAGCACAGGTCATGGCCAGACAGATATGGGTTTAATCCCAATGCCAAGGATTAATAATGTTGCTCATTTGCATGCCAATAATGGAGTTTCAGCTTCTCATGATGATAGACCAAATAATTTACCACATCCACCACAAAATTATTCCCAAAGGTCATGGCAATCATCAATAATGGAGGCAAATACAAACAATAGTAGACAAAAACCCCAACTTGGTTTGACGGATTCTCATACAAAGGGATATGAAACCATGGTGGAAGAGCACAATTGTGGGGGCATGTCTAATTGCATGAAGGAGAATAAGTTGGATTCTACTTCATTGTCAAGTTCTGATGAGTTGATGCTTGATCTTGAATTCACCCTTGGAAGGCCAAATTGGGAAAAGGAACATCAAAAGGAGTCATCAAGAGTAGAATTAACCCTTCTCAAATGTTAA 1077 0.3937 MLTNSLPSIMQTLLASSPPKFQGPDLSLNISPPCVSVSDSENNNLNNNNNMNMNMNMNMFLSSRKKIVYNDISTSSTTSDSGGSSCGSASDLSHENNNLLHHQPTLTLDLNNYHHHHQGLSRSFNNHHHFQPQIYGREFKRSSRVINGVKRSVRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKSTDKSTGHGQTDMGLIPMPRINNVAHLHANNGVSASHDDRPNNLPHPPQNYSQRSWQSSIMEANTNNSRQKPQLGLTDSHTKGYETMVEEHNCGGMSNCMKENKLDSTSLSSSDELMLDLEFTLGRPNWEKEHQKESSRVELTLLKC* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3910 358 SUPERFAMILY Homeodomain-like 153 210 IPR009057 -
Amo16g3910 358 MobiDBLite consensus disorder prediction 242 265 - -
Amo16g3910 358 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 1 350 IPR044847 GO:0000976|GO:0006355|GO:0010158
Amo16g3910 358 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 156 209 IPR006447 GO:0003677
Amo16g3910 358 MobiDBLite consensus disorder prediction 74 96 - -
Amo16g3910 358 Gene3D - 155 212 - -
Amo16g3910 358 Pfam Myb-like DNA-binding domain 157 208 IPR001005 -
Amo16g3910 358 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 1 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g3910 Amo-Chr16 150884425 150890328 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Amo16g3910 Myb_DNA-binding 1.6e-05 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g3910 16 150884425 150890328 Amo16g3910 16 150884425 150890328 ECH
Amo16g3910 16 150884425 150890328 Amo08g0368 08 7213780 7216643 PCT
Amo16g3910 16 150884425 150890328 Amo17g2353 17 118848997 118851923 PCT
Amo08g0368 08 7213780 7216643 Amo16g3910 16 150884425 150890328 PCT
Amo17g2353 17 118848997 118851923 Amo16g3910 16 150884425 150890328 PCT