Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3907 ATGGCCTGCGAGAGCTGTGGCTGTGAAGGGAACTTGAATGTGAGAAAGCCTCAGTTCTATGAGTTTTATTCTTCCACTCCTGAGAAGCTGAATATCCCGTATCAATTTTCAATGGCACATCTCCCAAACTGCAAGATAAAGATTATCCTCCATAATTTGAAAGGAGAACATTGGACTGTTAATTCTGTGCCATCAACAAGAGTGCATACAAGTCACACTCTCTGCGGAGGATGGATGGCCTTTGTGCGTGGCAATAACATAAAGGTTGGAGATGTCTGCATTTTTGAACTCGTGCATGAGTGTGAATTACTTGTTCGTATTGCTGGAGGTGGAAAAGATCTACAAGACCCGGTTGCGAAACCAGATTTAAGTAACCCTAGTGCAGGACATGCTATCACTTGCCATAAGGCTTCAAGATATATGTCGGTGAATCCTAAAGACAACCCAAAAAACATAATAAACGTTGATCAATCAGTTAAAAAGCGGTCAAAGGTTGGTCAAGAAGCTGCTTTTTCCATTGAATTAAGGAAATCTGGTAAAAGATCAAATTCTTCTAAGAAAACGGGGCTTGGCAATCGGACGAAAGCTGCCAATAAAAAGTTGGCAGAGACAGCTGCTCAGAAGAGGCATCGTGTTGAAGATGAATTAAGCTCACAAGCTAATGCTGGTTTGAGAATGTTGTTTGCACTCGATGAACAAAGAGTGGCTCAAGCCTTTACTTCCCCTTTTCCTAATTTTGTGAAAATCATGAAAAAGTTCAATGTCAGTGGATCATACACTTTGAAAATCCCATACCAGTTCTCTGCTGCACATCTCCCAGCCTACAAAACAGAAATTATTCTTCGAAATTTAAGAGGTGAAAGTTGGACTGTGAACTCTGTACCGGACGCAAAAGGCAGAACGGTGCATACCTTTTGTGGTGGATGGATGGCCTTTGTTCGCGATAATGACATCAATTTTGGAGACACATGCATATTCGAACTTGTTGCTCAGGGTGAGATGCGGGTTTATATATCTGGGGTGGGAAAGGAGGGGCTTGAACATCAAAATGGTCAAGTGAAACTTAATAGATTATTGGCCAACGTTCCATCTACCTGCTAA 1101 0.4178 MACESCGCEGNLNVRKPQFYEFYSSTPEKLNIPYQFSMAHLPNCKIKIILHNLKGEHWTVNSVPSTRVHTSHTLCGGWMAFVRGNNIKVGDVCIFELVHECELLVRIAGGGKDLQDPVAKPDLSNPSAGHAITCHKASRYMSVNPKDNPKNIINVDQSVKKRSKVGQEAAFSIELRKSGKRSNSSKKTGLGNRTKAANKKLAETAAQKRHRVEDELSSQANAGLRMLFALDEQRVAQAFTSPFPNFVKIMKKFNVSGSYTLKIPYQFSAAHLPAYKTEIILRNLRGESWTVNSVPDAKGRTVHTFCGGWMAFVRDNDINFGDTCIFELVAQGEMRVYISGVGKEGLEHQNGQVKLNRLLANVPSTC* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3907 366 Gene3D - 231 341 IPR015300 -
Amo16g3907 366 PANTHER B3 DOMAIN-CONTAINING 223 364 - -
Amo16g3907 366 ProSiteProfiles B3 DNA-binding domain profile. 15 111 IPR003340 GO:0003677
Amo16g3907 366 SUPERFAMILY DNA-binding pseudobarrel domain 28 108 IPR015300 -
Amo16g3907 366 Pfam B3 DNA binding domain 28 106 IPR003340 GO:0003677
Amo16g3907 366 Pfam B3 DNA binding domain 246 338 IPR003340 GO:0003677
Amo16g3907 366 ProSiteProfiles B3 DNA-binding domain profile. 246 342 IPR003340 GO:0003677
Amo16g3907 366 SMART B3_2 22 111 IPR003340 GO:0003677
Amo16g3907 366 SMART B3_2 246 342 IPR003340 GO:0003677
Amo16g3907 366 Gene3D - 11 110 IPR015300 -
Amo16g3907 366 PANTHER B3 DNA-BINDING DOMAIN PROTEIN 28 221 - -
Amo16g3907 366 CDD B3_DNA 244 338 IPR003340 GO:0003677
Amo16g3907 366 MobiDBLite consensus disorder prediction 176 198 - -
Amo16g3907 366 CDD B3_DNA 29 107 IPR003340 GO:0003677
Amo16g3907 366 PANTHER B3 DOMAIN-CONTAINING 28 221 - -
Amo16g3907 366 PANTHER B3 DNA-BINDING DOMAIN PROTEIN 223 364 - -
Amo16g3907 366 SUPERFAMILY DNA-binding pseudobarrel domain 239 340 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g3907 Amo-Chr16 150839097 150843141 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Amo16g3907 B3 1e-14 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g3907 16 150839097 150843141 Amo16g3907 16 150839097 150843141 ECH