Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3888 ATGCCTCCAATAATTTCACGCAAACCATCATCACCACCATCATGTGTTGTGCATGATCATCATGATGAAAAAACCATGAAGAAACAAAGCAACTACCAGAGATCAAAAACATGTAACAGTATCAACACCAACGTTCTTGATGAGGTTCAGCATGTTACAAGGCAGAGGAAGTTGGTTAGGCACCTTAAGGACAAAGAAGTCTTTGATTTGTTGCATTTGCACTCCACTATCAATTGTTCTTGTTCTTCTTCCTGCTCGCGAGGCCGTAGTTCTAGCATCGGCTGCGGACACTGGTCTATTTCTGCTAAGCCGCAGCCGTTGCCACTTCCCGAGTCAACGGGCCTCGGATTAGGCCATGTCCACCTGCTTGGATCTCCTTCCACAGAACAGCCTAGTTTTGCTTTGACTTTGAGGAAAACAGTGAATCATGGTGCATTGACATGTACAAAACCTTCAAGCAATTTGGATAGACCCTCTCAAGACCTTACAACTATAGCAAAAGCAAAAAATAATCTGAGAGTGCACATTCCAGCTAAAACTTTCTTGGCAGGGAATAGTTCATGCAAAATTCCCCCATCATTGTGTCATTATGATGAAAATGATGATGATGATTGTGTGAGTATTTCTGGTTTGAGCATGCATGTTGCTGCCAAGAGTGCCCCATCAAGTGTCTTCTCTAGTCCAGTCACTAGTCCACATGGATCAAACAACAACCCACAACATTTCTTTGATCATCATCACACCATCAATAATATCCTTCAACAACTCAATGACAATGATTTCAATTTGTATCATCATCATCACCACCACCTACCACAAGCTAATACTAACAAAAATAATGTTCATATTTGCCCTGCTAGCTTAAGTACTGCTTATCATTCTAATCCCAAAAATAACCATGTTGATGCACATCCCTTGCCACTTCCTCCTAGAGTTTCATCATCAATGATACTACATCAACCATCACCTTCTTCAATGAAAGGCCAATGGCAGAAAGGGAAACTAATCGGTCGCGGCACCTTTGGAAGTGTTTATCATGCAACCAACCTAGAAACTGGAGCTTCTTGTGCAATGAAGCAAGTGGATATAATTCCTGATGATCCTACATCTGCTGAGTGCATAAAGCAACTAGAGCAGGAAATCAAAATCCTTCATCAACTACACCACCCCAATATAGTGCAGTATTATGGAAGTGAAATAGTTGGTGATCATTTGTACATATATATGGAGTATGTTCATCCAGGATCAGTTAATAAATTTATTAGGGAGCATTGTGGAGCTATGACAGAATCTGTAGTTCGAAATTTCACAAGACACATTCTCTCTGGATTGGCCTACTTACACAGCACCAAGACTATTCACAGGGATATCAAAGGTGCAAACTTGCTTGTTAATGAATCTGGCATTGTCAAGCTTGCAGATTTTGGGATGGCCAAAATTCTCTCAGGGAATTCATATGAACTTTCTTTGAAGGGAAGTCCTTATTGGATGGCTCCTGAGGTGATGAAAGCTGCCATTAAGAATGAATCAAATCCTGATGTTGCCATGGGTATTGATATATGGAGCTTAGGCTGCACCATCATTGAAATGTTGTCAGGAAAGCCTCCTTGGAGTGACCTTGAAGGGCCATCAGCAATGTTCAAGGTACTACAGAGCACACCACCAATACCAGAGAGTTTATCATCAGTGGGAAAGGATTTCCTGCAGCAATGTTTCAGAAGGGACCCTGCTGATAGACCTTCTGCATCAATGCTTCTTAACCATCCCTTTCTCCACAACTTTCATGATCAAGATAATCCTCTAATTCATCCTCATTTAAATTTGTGTCACAAAGGAGACCAAGGACAAGGAGATAATTCATCTAGTCCCAAAGATAATACCAAAAATAGACATGATATATTGCCAACCTCCATGAGCACAAAGATTTTCAACAAAACTCAGAAATTAATGGGGTTTTTTTCTTTATTTGCTATAATTTAA 1980 0.4051 MPPIISRKPSSPPSCVVHDHHDEKTMKKQSNYQRSKTCNSINTNVLDEVQHVTRQRKLVRHLKDKEVFDLLHLHSTINCSCSSSCSRGRSSSIGCGHWSISAKPQPLPLPESTGLGLGHVHLLGSPSTEQPSFALTLRKTVNHGALTCTKPSSNLDRPSQDLTTIAKAKNNLRVHIPAKTFLAGNSSCKIPPSLCHYDENDDDDCVSISGLSMHVAAKSAPSSVFSSPVTSPHGSNNNPQHFFDHHHTINNILQQLNDNDFNLYHHHHHHLPQANTNKNNVHICPASLSTAYHSNPKNNHVDAHPLPLPPRVSSSMILHQPSPSSMKGQWQKGKLIGRGTFGSVYHATNLETGASCAMKQVDIIPDDPTSAECIKQLEQEIKILHQLHHPNIVQYYGSEIVGDHLYIYMEYVHPGSVNKFIREHCGAMTESVVRNFTRHILSGLAYLHSTKTIHRDIKGANLLVNESGIVKLADFGMAKILSGNSYELSLKGSPYWMAPEVMKAAIKNESNPDVAMGIDIWSLGCTIIEMLSGKPPWSDLEGPSAMFKVLQSTPPIPESLSSVGKDFLQQCFRRDPADRPSASMLLNHPFLHNFHDQDNPLIHPHLNLCHKGDQGQGDNSSSPKDNTKNRHDILPTSMSTKIFNKTQKLMGFFSLFAII* 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3888 659 MobiDBLite consensus disorder prediction 609 633 - -
Amo16g3888 659 Pfam Protein kinase domain 331 591 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo16g3888 659 ProSiteProfiles Protein kinase domain profile. 330 591 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo16g3888 659 Gene3D Transferase(Phosphotransferase) domain 1 327 629 - -
Amo16g3888 659 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 25 646 - -
Amo16g3888 659 SUPERFAMILY Protein kinase-like (PK-like) 313 608 IPR011009 -
Amo16g3888 659 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE YODA 25 646 - -
Amo16g3888 659 ProSitePatterns Protein kinases ATP-binding region signature. 336 359 IPR017441 GO:0005524
Amo16g3888 659 SMART serkin_6 330 591 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g3888 Amo-Chr16 150682206 150688707 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g3888 294 593 MAP Kinase Kinase Kinase AT5G66850 66.774 2.74e-149 447
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Amo16g3888 Pkinase 1.2e-67 CL0016