Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3876 ATGGAGCGATCAAAATCATCTACTGAACAAATTCATGATCATCAGCCCCCAACTTATGGGAACTTAATTACCATTCTCAGCATTGATGGAGGTGGTATTAGGGGAATTATTTCTGCTACTATTCTTAATTTGATTGAATCACAGCTTCAGGAGTTAGATGGTGAAGATGCAAGACTTGCAGATTATTTTGATATGATATCGGGAACAAGCACTGGAGGTCTTGTAACTGCTATGTTAACTGCTCCAGATAAACATAACCGTCCACTTTTTGCTGCTAAAGATATCAAACCATTTTACTTGGAGCACTGCCCAAAAATTTTTCCACAATATAGGGGCCTGCGTGGAACACTGATGGCAAAGGTAATTAGACAATTGGGAGGACCAAAATATGATGGAAAATACTTGCAGAGAGTGATTAGAAATAAACTTGGAGACATTCGTTTGCACCAGACAATCACCAATGTTGTCATTCCCACTTTTGACATCAAATGTTTACAACCAACTATTTTCTCATCTTATCAGATTAAGAATTCTCCTGGCTTTGATGCTAAACTATCAGATATATGCATTAGCACATCAGCTGCACCTACTTATCTCCCTGCCCATCACTTCACCAACAAGGATTCAAATGGAAATCTACATGAATTTAACCTCATTGATGGTGGTGTTTGTGCCAATAATCCGACTTTACTTGCCATGAATCAAATAACAAAGCAAATCATTGATGAAAATACAGATTTCTTGGCCATTAAACCTACAGACTATGGTCGCTTCCTAATTATTTCAATAGGGACAGGAGCAGCCAAAAATGATGGAAAATTCAATGCAAAAAAGGCAGCCAAATGGGGACTATTGGATTGGCTAACCTATAGTGGTACCAGTCCTTTAATTAATATTTTTTCTCAATCAAGTGGCGATATGGTTGATTTTCACTTAGCTGCTCTCACTCAAGCACTTCATTTCAAAGAAAATTACCTTCGAATTCAGGATGATACATTGACAGGAACTGATTCTTCAGTTGACATATCTTCTAAGGAGAACTTGGAGAGGCTTTGCCAAATTGGTGAAAATTTGTTGAAGAAACCAGTCTCTAGGGTTAATTTGAAGAATGGTCGATTTGAGCCACTAGACAAAGGAGAAACCAATGAAGAAGCTCTCAAAAGGTTTGCAAAATTACTATCAGAAGAGAAGAGACTCCGTGACATGAGATCCCGTGGTATTAGGGGACTTATCCCAGCAACCATTCTTAATTTCCTTGAATCACAACTTCAGGAGTTGGATGGTGAAGATGTGAGGCTTGCAGATTATTTTGATGTGATATCAGGAACAAGCACTGGAGGTCTTGTAACTGCTATGTTAACTGCTCCAGATAAACATAACCGTCCACTTTTTGCCGCTAAGGATATCAAACCCTTTTACATGGAACACTGCCCAAATATTTTTCCACAACCTAGAGGACTCCGTGGAACATTAATGGCAAAGGTAATAAGACAATTAGGAGGACCAAAATATGATGGAAAATATTTGCATGGAGTGGTTAAAGAGAAACTTGGAAACATTCGTTTGCATGAGACCATCACCAATGTTGTTATTCCCACCTTTGACATCAAAACTTTGCAACCAACTATTTTCTCATCTTACCAGATTAAGAATTCGCCTTGTTTGGATGCAAAATTATCAGACATATGCATTGGCACATCAGCTGCACCAACCTATCTCCCTGCTCACCAATTCACCAACAAAGTTCCAAAAGGAAATGTGCATGAATTCAACCTCATTGATGGTGGTGTTTGTGCCAATAATCCGACTCTAGTTGCTATGAATCAAGTAACAAAGCAAATAATCAACCAGAATGCTGATTTCTTTCCAATAAAGCCTTCAGACTATAGTCGGTTCCTAATAATTTCAATAGGGACTGGGACAGCCAAAAATGAAGAAAAAATGGATGCAAAAATGACAGCTAAATGGGGTTTATTAGATTGGCTAACTCATAGTGGCTCCATTCCTTTAATTGATATTTTTTCTCAATCAAGTTCTGATATGGTTGATTTCCATTTAGCTACTCTCACTCGAGCACTTCATTCAGAACACAATTATCTTCGAATTCAGGATGACACGTTGATTGGAAATGATTCTTCAGTTGACATTGCTACTAAGGAGAATTTGGATAGACTTTGCCAAATTGGTGAAAATTTGTTGAAGAAACCAGTTTCTAGGATGAATTTAGAGAATGGTAAAATTGAACCAATTGGAAATGGAGGAACCAATGAAGAAGCACTCAAAAGGTTCGCAAAAATACTTTCACACGAGAGGAGACTCCGTGACATGAGATCCCCTCACACTAAGAAAGCATCTACTACTAAATAG 2367 0.3807 MERSKSSTEQIHDHQPPTYGNLITILSIDGGGIRGIISATILNLIESQLQELDGEDARLADYFDMISGTSTGGLVTAMLTAPDKHNRPLFAAKDIKPFYLEHCPKIFPQYRGLRGTLMAKVIRQLGGPKYDGKYLQRVIRNKLGDIRLHQTITNVVIPTFDIKCLQPTIFSSYQIKNSPGFDAKLSDICISTSAAPTYLPAHHFTNKDSNGNLHEFNLIDGGVCANNPTLLAMNQITKQIIDENTDFLAIKPTDYGRFLIISIGTGAAKNDGKFNAKKAAKWGLLDWLTYSGTSPLINIFSQSSGDMVDFHLAALTQALHFKENYLRIQDDTLTGTDSSVDISSKENLERLCQIGENLLKKPVSRVNLKNGRFEPLDKGETNEEALKRFAKLLSEEKRLRDMRSRGIRGLIPATILNFLESQLQELDGEDVRLADYFDVISGTSTGGLVTAMLTAPDKHNRPLFAAKDIKPFYMEHCPNIFPQPRGLRGTLMAKVIRQLGGPKYDGKYLHGVVKEKLGNIRLHETITNVVIPTFDIKTLQPTIFSSYQIKNSPCLDAKLSDICIGTSAAPTYLPAHQFTNKVPKGNVHEFNLIDGGVCANNPTLVAMNQVTKQIINQNADFFPIKPSDYSRFLIISIGTGTAKNEEKMDAKMTAKWGLLDWLTHSGSIPLIDIFSQSSSDMVDFHLATLTRALHSEHNYLRIQDDTLIGNDSSVDIATKENLDRLCQIGENLLKKPVSRMNLENGKIEPIGNGGTNEEALKRFAKILSHERRLRDMRSPHTKKASTTK* 789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3876 788 CDD Pat17_isozyme_like 20 371 - -
Amo16g3876 788 PANTHER XYLOSE ISOMERASE 406 783 - -
Amo16g3876 788 PANTHER PATATIN 1 404 - -
Amo16g3876 788 CDD Pat17_isozyme_like 406 745 - -
Amo16g3876 788 Pfam Patatin-like phospholipase 406 607 IPR002641 GO:0006629
Amo16g3876 788 Pfam Patatin-like phospholipase 26 233 IPR002641 GO:0006629
Amo16g3876 788 ProSiteProfiles Patatin-like phospholipase (PNPLA) domain profile. 26 233 IPR002641 GO:0006629
Amo16g3876 788 PANTHER PATATIN 406 783 - -
Amo16g3876 788 ProSiteProfiles Patatin-like phospholipase (PNPLA) domain profile. 400 607 IPR002641 GO:0006629
Amo16g3876 788 Gene3D Cytosolic phospholipase A2 catalytic domain 10 405 - -
Amo16g3876 788 Gene3D Cytosolic phospholipase A2 catalytic domain 406 779 - -
Amo16g3876 788 PANTHER XYLOSE ISOMERASE 1 404 - -
Amo16g3876 788 SUPERFAMILY FabD/lysophospholipase-like 406 743 IPR016035 -
Amo16g3876 788 SUPERFAMILY FabD/lysophospholipase-like 22 370 IPR016035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g3876 Amo-Chr16 150560459 150571773 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g3876 406 782 Miscellaneous Gene Families AT2G26560 63.926 5.65e-170 494
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g3876 16 150560459 150571773 Amo16g3876 16 150560459 150571773 ECH
Amo16g3876 16 150560459 150571773 Amo06g3084 06 97763998 97770701 hybridization