Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3858 ATGTCTGGTGGTACGAAGGGCGAACACCACCAAACGGTTCCCCTATCGGTGTTGTTGAAGCGCGAATTGGCGAGCGAGAAGATCGAGAAGCCAGAGATTGTTTCAGGCCAAGCAGGGCAGAGCAAGAAAGGGGAGGATTTCACCCTCATCAAAACTGAATGCCAGAGGGTGGTGGGGGATGGGGTCTCCACATTTTCTGTTTTTGGGCTATTTGATGGACACAATGGAACTGCTGCTGCTATTTATTCTAAGGAGAATCTTCTAAATAATGTTTTAAGTGCGGTTCCTCCTGATCTTAACAGAGATGAGTGGGTAGCAGCATTGCCTAGGGCATTGGTTGCAGGCTTTGTAAAAACTGACAAAGATTTTCAGGACAAAGGACAAAAATCTGGAACCACTGTAACGTTTGTGATTATAGAAGGATGGGTTGTAACTGTTGCATCAGTTGGTGATTCACGTTGCGTGCTTGAATCTGGTGAAGGTGGGCTTTATTATTTGTCAGCAGATCATAGGCTAGAAACAAATGAAGAGGAGAGGGTGCGAATCACCTCTAGCGGGGGTGAGGTTGGTCGGCTAAACACCGGGGGAGGCACAGAGGTTGGGCCGTTAAGATGTTGGCCTGGTGGCTTGTGTCTTTCACGGTCAATTGGTGATATGGATATTGGCGAATTTATTGTCCCAGTGCCGTATGTAAAGCAAGTGAAGTTGTCCACCGCTGGAGGCAGGCTAGTTATCTGCAGTGATGGGGTCTGGGATTCTCTATCTGCAGAAGCAGTCTTAGATTCTTGTCGTGGCATGTCAGCGGAGACAGCAGCATCACATATTGTTAAAGAAGCTGTAGAAGCAAAAGGACTTAGAGATGATACAACCTGCATCGTTGTTGATATATTACCACATGAGAAGCCACCTGCTCCTGCACCACATAGAAAGAAGAAAGGAATAATGAAGTCCATGTTTCGTAAAAAGTCATCTGAGTCATCTTCTTATAACGAGAAAGACTACTTGGAGCCAGACGTGGTAGAGGAATTGTATGAAGAAGGATCTGCTATGCTTTCAGAGAGGTTAGATACAAAATATCCTCTCTGCAACATGTTCAAGTTGTTTATGTGTGCAGTGTGTCAAGTAGAGATAAAACCAGGGGAGGGTGTTTCAATATTTGAGGGTGCGCCCAACCCTCGTAAACTGCGTCCATGGGATGGACCTTTCCTCTGTACAAGTTGTCAAGATAAGAAAGAAGCCATGGAAGGAAAAAAAGCATCAGGTAGACATAGCAGTGGAAGTGATGATGATTAA 1293 0.454 MSGGTKGEHHQTVPLSVLLKRELASEKIEKPEIVSGQAGQSKKGEDFTLIKTECQRVVGDGVSTFSVFGLFDGHNGTAAAIYSKENLLNNVLSAVPPDLNRDEWVAALPRALVAGFVKTDKDFQDKGQKSGTTVTFVIIEGWVVTVASVGDSRCVLESGEGGLYYLSADHRLETNEEERVRITSSGGEVGRLNTGGGTEVGPLRCWPGGLCLSRSIGDMDIGEFIVPVPYVKQVKLSTAGGRLVICSDGVWDSLSAEAVLDSCRGMSAETAASHIVKEAVEAKGLRDDTTCIVVDILPHEKPPAPAPHRKKKGIMKSMFRKKSSESSSYNEKDYLEPDVVEELYEEGSAMLSERLDTKYPLCNMFKLFMCAVCQVEIKPGEGVSIFEGAPNPRKLRPWDGPFLCTSCQDKKEAMEGKKASGRHSSGSDDD* 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3858 430 Gene3D - 33 302 IPR036457 -
Amo16g3858 430 CDD PP2Cc 34 296 IPR001932 -
Amo16g3858 430 Pfam Protein phosphatase 2C 57 281 IPR001932 -
Amo16g3858 430 PANTHER ALPHABET, ISOFORM E-RELATED 8 424 - -
Amo16g3858 430 PANTHER CATALYTIC/PROTEIN PHOSPHATASE TYPE 2C 8 424 - -
Amo16g3858 430 SMART PP2C_4 24 294 IPR001932 -
Amo16g3858 430 SMART PP2C_SIG_2 49 296 IPR001932 -
Amo16g3858 430 ProSiteProfiles PPM-type phosphatase domain profile. 30 296 IPR001932 -
Amo16g3858 430 SUPERFAMILY PP2C-like 34 296 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g3858 Amo-Chr16 150410609 150415896 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g3858 5 428 PP2C-type Phosphatase Gene Family AT1G47380 79.859 0.0 713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g3858 16 150410609 150415896 Amo16g3858 16 150410609 150415896 ECH
Amo16g3858 16 150410609 150415896 Amo17g2385 17 119781642 119785763 PCT
Amo17g2385 17 119781642 119785763 Amo16g3858 16 150410609 150415896 PCT