Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3843 ATGGACGGCTACGATGGAACCGTTAGGCTCGGAGCCATAAACCTCAAGCAGCATGATCTTCGAGCCGGCGCCGCCGGCGAATTTGACTCCGGACCGGACGTTTCAGTTTCGTCGCCGGTCACCAGGCAGAAAGCCGCCGCCGCTAAACAGTTCATCGAGAATCACTACAAGAATTATCTCCAAGGATTGCAGGATCGCAAAGACAGACGTAGAGAGCTACAGAGGAAAGTGCAGGAAGCTCAAATATCGGTTGAAGAGCGGGAGGAGATGATGAGGAATTTGGAGAGGAGAGAAACAGAGTATATGAGGCTTCAGAGACGTAAAGTTGGAATTGATGATTTTGAGCAATTAACAGTAATTGGTAAAGGTGCTTTTGGTGAGGTGAGGCTATGTCGTGCTAAAGGTACAGGAGAGGTTTTTGCCATGAAGAAGTTAAAGAAGTCAGAAATGCTTAGCCGCGGACAGGTTGAACATGTTCGATCAGAGAGGAACTTGCTGGCAGAGGTTGACAGTAGATGCATAGTAAAACTCCATTATTCGTTCCAAGATGCAGATTTCTTATATCTCATCATGGAATATTTACCTGGTGGTGACATTATGACATTGTTGATGAGAGAAGATATTCTTTCTGAGGATGTTGCTCGTTTCTACATTGCTGAAAGCATTCTTGCTATTCACTCAATACATCAGTACAACTATGTCCACAGGGATATAAAACCAGATAACCTGATACTGGATAAAAATGGCCATTTGAAGCTTTCGGACTTTGGATTATGTAAGCCTCTTGATGATAAGTATTCAAGTATATTGGAAAATGAAGATTTTACCAGTCAAGAATCAACTAGTGAAACTGATGGATACTCTGTGTCCCCTTGGTTGATGCCTAAGGAACAATTACAGCAGTGGAAACGTAATCGGCGAACATTGGCATATTCAACGGTTGGAACTCTTGATTATATGGCACCTGAAGTTTTGCTCAAGAAGGGATATGGAATGGAATGTGATTGGTGGTCTCTTGGGGCAATCATGTATGAGATGCTTATTGGGTATCCTCCCTTCTGTTCTGATGATCCAAGGATGGCCTGCCGAAAGATTGTTAACTGGAGAACATGCCTGAAATTCCCTGAAGAACCCAAGATATCAGCTGAAGCTAAGGATCTCATATGTCGCTTACTATGTGATGTTGACACTAGACTAGGAACCAGAGGAATAGAAGAAATAAAGGCTCATCCATGGTTCAAGAGTGTTCAGTGGGATCTGCTTTATGAATCAGAGGCTGCATTTAAACCTACAGTTACTGGAGACTTGGATACGCAAAATTTTGAGAAGTTTCCTGATATAGAAGGTCCACCATCTGTAACTGCAACTGTAGGACCTTGGCGAAAGATGTTGACATCCAAAGACACCAATTTCATAGGATATACTTTTAAGAAATCAGACATTCTTAAATCACTTGAAAATTCAGGTGCAGACGTTAAAGTAAATGGATCATCAAATGCCCCATCATTGATATCCTTATTAGGTAGGATTGATTTGCAAGATACCGTCATCCCAGAAACTGAGCAGAAGCCATAA 1575 0.4229 MDGYDGTVRLGAINLKQHDLRAGAAGEFDSGPDVSVSSPVTRQKAAAAKQFIENHYKNYLQGLQDRKDRRRELQRKVQEAQISVEEREEMMRNLERRETEYMRLQRRKVGIDDFEQLTVIGKGAFGEVRLCRAKGTGEVFAMKKLKKSEMLSRGQVEHVRSERNLLAEVDSRCIVKLHYSFQDADFLYLIMEYLPGGDIMTLLMREDILSEDVARFYIAESILAIHSIHQYNYVHRDIKPDNLILDKNGHLKLSDFGLCKPLDDKYSSILENEDFTSQESTSETDGYSVSPWLMPKEQLQQWKRNRRTLAYSTVGTLDYMAPEVLLKKGYGMECDWWSLGAIMYEMLIGYPPFCSDDPRMACRKIVNWRTCLKFPEEPKISAEAKDLICRLLCDVDTRLGTRGIEEIKAHPWFKSVQWDLLYESEAAFKPTVTGDLDTQNFEKFPDIEGPPSVTATVGPWRKMLTSKDTNFIGYTFKKSDILKSLENSGADVKVNGSSNAPSLISLLGRIDLQDTVIPETEQKP* 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3843 524 PANTHER SERINE/THREONINE-PROTEIN KINASE 37 511 - -
Amo16g3843 524 ProSitePatterns Serine/Threonine protein kinases active-site signature. 233 245 IPR008271 GO:0004672|GO:0006468
Amo16g3843 524 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 37 511 - -
Amo16g3843 524 Pfam Protein kinase domain 114 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo16g3843 524 Coils Coil 63 107 - -
Amo16g3843 524 SMART serkin_6 114 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo16g3843 524 CDD STKc_NDR_like 112 477 - -
Amo16g3843 524 Gene3D Transferase(Phosphotransferase) domain 1 198 287 - -
Amo16g3843 524 Gene3D Transferase(Phosphotransferase) domain 1 308 431 - -
Amo16g3843 524 SMART pkinase_C_6 414 478 IPR000961 GO:0004674|GO:0005524|GO:0006468
Amo16g3843 524 SUPERFAMILY Protein kinase-like (PK-like) 91 464 IPR011009 -
Amo16g3843 524 Pfam Protein kinase C terminal domain 432 476 IPR017892 GO:0004674|GO:0005524|GO:0006468
Amo16g3843 524 ProSiteProfiles AGC-kinase C-terminal domain profile. 414 486 IPR000961 GO:0004674|GO:0005524|GO:0006468
Amo16g3843 524 ProSiteProfiles Protein kinase domain profile. 114 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo16g3843 524 ProSitePatterns Protein kinases ATP-binding region signature. 120 143 IPR017441 GO:0005524
Amo16g3843 524 Gene3D Phosphorylase Kinase; domain 1 432 442 - -
Amo16g3843 524 Gene3D Phosphorylase Kinase; domain 1 111 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g3843 Amo-Chr16 150202931 150208791 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g3843 1 514 AGC Kinase Gene Family AT5G09890 77.992 0.0 837
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Amo16g3843 Pkinase 8.3e-64 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g3843 16 150202931 150208791 Amo16g3843 16 150202931 150208791 ECH