Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3842 ATGGAAGAGTTATCAAAGAATATTGTAGCTACAAATCATGAGGGTCTAAGTGGTAAAATAAGCTTCAAAGATGGAAAATTGTTGGAACCAGCAACATTTAAGATTGTCAATGTTATTGGAAAAAGTTACAATGAGTTAGCATATTGGTCACCAGAATCCGGTTTCTCAGAGAACCTTGTCAACCAAATTAGTCCTTCTTCTGCTTCTGCTTCTGCCTCTGGTAGAGTACTTTTAAGTAATGCGAATTGGCCGGGTGGATCGAAATCAGTGCCAAAAGGTTGGGTTTATAATAATGGAGGAAGGAGGAGTTTGAAGATTGGTGTCCCTGCTGGGGATCCATGTCCTCAGTTTGTGAATGTGAGTTATAATCAGAGGTTGAATCAAACACATATCACTGGTTTCTCAATACATGTCTTTGAAGCAGTTGTCAAGCATTTACCTTATCAGCTTCCTTATCATTTGGTTCCATTTTATGGATCCTATGATGACATAGTTGTGCAAGTGAACAATAAGGTTTTTGATGCTGCTGTTGGTGATATTCAAGTAATGGACCAAAGATATGCATATGCTGAATTCTCTCATCCATATATTCCATCTGGTATTGCCATGGTGGCAAAAGTAAAGCCAGATAGATCAAAAGAAACATGGATGTTCATGGAAGCTTTCACAAAAGAAATGTGGTTGTTAATGGCAGCAATGCACATGTTTGTATCATTTGTTATATGGTTGATTGAACGTGAACACAATTCAGAGATTAAAGGGTTTGGAACCATGCTATGGTTTTCTGTCACCACATTATTCTTTGTACATAGAGAACCCGTGAAAACCAACTTGGCCAGAGCAGTGCTAGCACCATGGTTGTTTGCAATTCTGATAGTGACAGCATGCTTCACAGCAAGCCTCTCATCAATGATGACAGTGTCTCAACTTGAACCATCTGTGCCTGATATACAAACATTGCTAAGGACCAATGCAGTAGTAGGTTGCAATAAGAACACATTTTTGGTTCATTACTTGGTTAATGAACTGAAATTCAAGCCTGAGAATGTTAAGGGCTTTGAATCAATTAGTGATTTTCCAAGGGCTTTTGAGAAAAAAGAAATTGTAGCAGCTTTTACTATTGCACCTCATGCTGAAGTCTTTCTTGCTACACATTGTAAGGGATATATCAAAGCAGGACCTACCTTAAAGCTTGGTGGATTAGGCTTTGCATTTCCCAAGGGTTCAGCCCTATCAATTGACATATCAAGAGCAACATTGAAAGCAATAGAAAGTGGAGAAGTACAAAAACTAGAAGAAGAAATGTTATCTAAAACCACTTGTGGATCTCCAAATAGCAACATTATTCAAAATGTTGAACTTGGTCCCCAACCATTCTTTGGTCTATTTGGAATTTGTGGAGGCATTGCTGTCTTTGGTTTTTTAGTCTCAATGGCTCCTCTAATTGGAAAGAAGGGAAAGGGATTTATCAACTATTTAGAAGGGACATCATCATTGTTACAAATAGGATTAGGCATAATAAAATCTTGTGTTTCAAAGAATCTAATAAGCAAGTACATAGCTAGTAGTGCTCCAATCCAAGATGAAAATAAGAACTTAGAGGATGTCTCAAATAAAATGGAGCAAAATGTAGTGAATATTGAGTTGCCAATAACAACACACCACCACTTATGA 1674 0.3757 MEELSKNIVATNHEGLSGKISFKDGKLLEPATFKIVNVIGKSYNELAYWSPESGFSENLVNQISPSSASASASGRVLLSNANWPGGSKSVPKGWVYNNGGRRSLKIGVPAGDPCPQFVNVSYNQRLNQTHITGFSIHVFEAVVKHLPYQLPYHLVPFYGSYDDIVVQVNNKVFDAAVGDIQVMDQRYAYAEFSHPYIPSGIAMVAKVKPDRSKETWMFMEAFTKEMWLLMAAMHMFVSFVIWLIEREHNSEIKGFGTMLWFSVTTLFFVHREPVKTNLARAVLAPWLFAILIVTACFTASLSSMMTVSQLEPSVPDIQTLLRTNAVVGCNKNTFLVHYLVNELKFKPENVKGFESISDFPRAFEKKEIVAAFTIAPHAEVFLATHCKGYIKAGPTLKLGGLGFAFPKGSALSIDISRATLKAIESGEVQKLEEEMLSKTTCGSPNSNIIQNVELGPQPFFGLFGICGGIAVFGFLVSMAPLIGKKGKGFINYLEGTSSLLQIGLGIIKSCVSKNLISKYIASSAPIQDENKNLEDVSNKMEQNVVNIELPITTHHHL* 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3842 557 SMART GluR_14 103 438 IPR001320 GO:0015276|GO:0016020
Amo16g3842 557 Pfam Bacterial extracellular solute-binding proteins, family 3 128 434 IPR001638 -
Amo16g3842 557 CDD GluR_Plant 104 436 - -
Amo16g3842 557 SUPERFAMILY Voltage-gated potassium channels 227 309 - -
Amo16g3842 557 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 2 510 - -
Amo16g3842 557 SUPERFAMILY Periplasmic binding protein-like II 93 433 - -
Amo16g3842 557 Gene3D - 104 215 - -
Amo16g3842 557 Gene3D - 2 103 - -
Amo16g3842 557 PANTHER GLUTAMATE RECEPTOR 2 510 - -
Amo16g3842 557 Pfam Ligand-gated ion channel 435 467 IPR001320 GO:0015276|GO:0016020
Amo16g3842 557 Gene3D - 216 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g3842 Amo-Chr16 150191290 150195088 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g3842 6 496 Ion Channels AT3G51480 34.320 7.27e-88 288