Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3832 ATGGTTTTCCCTCAGCACCAGTTCCAACGGCACTACCAAACCCACCACCAGCAGCAGCAACAACAACCACAAACTAAATCTTTCAGAAACCTGCAAGCAATGGAAGCTCATATGCCACCTCAGGTTCCCTTTTACAATCCCACTGATTTGCAAGATCAGTCCCAACATCCACCATACATTCCTCCATTCCATGTTGTTGGGTTTGCTCCGGGTCCAGTTCCTCCCGCCGATGGTAGTGACGGTGGTGTTGATTTGCAATGGAATTACGGTTTGGAACCTGAGAGGAAGAGACTAAAAGAACAGGATTTCTTGGAGAACAATTCTCAGGTATCTTCTGTAGATTTCCTGCAGCCACTATCGGTGTCCACTGGATTGGGCTTGTCACTTGACAATCCCCGCTTGGTTTCAACTGGAGACTCTGCTCTGTTGTCACTCATTGGAGATGACATTGAGCGTGAGTTACAGCAGCAGGAATTAGAGGTAGAAAGGTTTCTCAAATTGCAGGGCGAACAAATGAGGCAATCAATTTTAGATAAGGTTCAGGCTTCACAGCTTCAGAGCGTTTTGGTTATCGAAGACAGGGTCCTTCAGAAACTCCGCGAGAAGGAAGCCGAGGTAGAAAGCATTAACCGGAGGAACATGGAGCTGGAAGACCAAATGGAGCAATTAACTATGGAAGCAGGTGTGTGGCAGCAAAGAGCCAAGCACAACGAGAGCATGATTGCTGCTCTCAAGTTCAACCTTCAGCAAGCATATGTCCAGAGCCGAGATAGTAAGGAAGGATGTGGCGACAGTGAGGTGGACGACACGGCTTCTTGCTGCAACGGCCGTTCCATCGATTTCCATCTTCTCTCAAAGGAGAACAATGGTATGAGAGAGATGATGACATGCAAGGCTTGTAGAGTCAATGAAGTTAACATGCTTTTGTTACCTTGTAAGCATCTTTGCCTTTGTAAAGACTGTGAAAGTAAGCTTAGTTTTTGTCCTTTATGTCAATCCTCTAAATTTATTGGTATGCAGGTCTATTTGTAA 1032 0.4583 MVFPQHQFQRHYQTHHQQQQQQPQTKSFRNLQAMEAHMPPQVPFYNPTDLQDQSQHPPYIPPFHVVGFAPGPVPPADGSDGGVDLQWNYGLEPERKRLKEQDFLENNSQVSSVDFLQPLSVSTGLGLSLDNPRLVSTGDSALLSLIGDDIERELQQQELEVERFLKLQGEQMRQSILDKVQASQLQSVLVIEDRVLQKLREKEAEVESINRRNMELEDQMEQLTMEAGVWQQRAKHNESMIAALKFNLQQAYVQSRDSKEGCGDSEVDDTASCCNGRSIDFHLLSKENNGMREMMTCKACRVNEVNMLLLPCKHLCLCKDCESKLSFCPLCQSSKFIGMQVYL* 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3832 343 Coils Coil 192 233 - -
Amo16g3832 343 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 13 342 IPR017066 -
Amo16g3832 343 ProSiteProfiles Zinc finger RING-type profile. 297 332 IPR001841 -
Amo16g3832 343 MobiDBLite consensus disorder prediction 1 27 - -
Amo16g3832 343 Pfam Zinc finger, C3HC4 type (RING finger) 295 333 - -
Amo16g3832 343 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 282 343 IPR013083 -
Amo16g3832 343 PIRSF SBP1_RNase_bind 2 343 IPR017066 -
Amo16g3832 343 Coils Coil 147 167 - -
Amo16g3832 343 PANTHER F2G19.2 13 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g3832 Amo-Chr16 150077382 150079911 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g3832 289 333 Miscellaneous Gene Families AT4G39050 42.222 4.38e-07 50.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g3832 16 150077382 150079911 Amo16g3832 16 150077382 150079911 ECH