Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3829 ATGCAAGGACAGCGAGATACAATCGGTTCCTTGCCAGAAACCTTAGAATTTGATTGTGGATCAACATCGAGTGGTGCAACCACTGCCACAGTGAATCAGCAGATTTGCTGGAATAATATGCGGAATCCTGCAGATAACCGAATACCCGAGTACATACTTCCCCCAAGTGATGTAAACCCATCTTATGTGAGCCCTTTGAATCATGGTTGGCAGAATTTGAGTGGATGGAGTTTAGGTGAGCCAAGTTACAGTAATACTCAGAATGAGGTTAACATTAACAATGACCAGAGAAGGGAACTAGGATGGCCATCTTCTATAAGTTTTGGTGCTCCTGCTGGTTCAAGGCAAGAAGAACGACGTGTTGAACCGACTAATGCTGTCTCAATGGACAATACTAATACTACTATGTATGTGCACGGTGCCAATTCTCATATGATGCCTCCGCAGAATCTTAACTTGAATGCAGGAATGGGAGACAGTAGTAGTGCTAATAGCCATCATGTTGAACATGCTAACTTGCCAAAGTCTATTGGACCGGTAAATGAGCATGTTCCTCCCCCGCTTATTGGTTCTGGTCCTTTGATGCTTCCTTCGGCAAGTAACAGCCTTTTGTTTGAGGATACTGATGGTAGACCAGGTTGTTCTGTCGACACTCGGCGTGTATCTTGTAAAAGAAAGGCTGTTGAACGCAGTGTTGGACAATGTTCTGATGGTGGAAGTTCTAGCTACAGTCAGCCTACAGATGGCAGTGCTTGGAACACGCTGCCTACTCAGGATTATGTTGGCGGTAGCCTTGGCAGATCTGCTTCGGTGGATAGGGTGAGTGCAAGACTCGGACTAAGTATGGGGGATGGCCCCTCTGAAAGCATTCCTGATTCGAATGTTGCAGGAAACCCGGAAAGCTTCCATAGGAACTTCCGGTTAAGGGTAAATCCTTCAAGTCAACAAAGTTCCATTCCTGTTCCTCCTCCCGCTGCATTCTCAACGGGAAATGTGATTAGAACTTCTGGTATTTCTCCGTCCGTTCCAGTGTTGCCAAGATTTCATCCGGCTGATAATTCTCTAGATGCGAGACCAGTACCAACTGTAGATACTATGATTCCTCAAAGTCAGCCCCTTCTAGTTCATGTTCCTGCTTTACCAAGGAATATGCAATCATTTAGGTGGGGTGGCGCTTCTAGCTCAGCAAACAACCATTCATCAAACTCAGCTATACCTGCGGATAATAGGGACAATAACATACCTCATGAGGACGCAAGCTCGAGAAGTTTGCCTAGAAACCTCTTTGAACACCCGGTGTTTGCACCCGGAACCAATTTAAGAAATTTGGCTCGAAATCCAACAAATAGGGCTCCGAGTAGTGGAAATTTAAGTATTCCAGGAAATGTTGCCGCTGCTTCTTCGTCGCGATCTGGGTCACATTCAGCTATCAATCCATCATCTGCCTCTCCATGGGTTGCTCGTCCTAATCCTCAGCATTATCCACGAAGGTTATCTGAATATGTTCGCCGGTCATTGTTTCCTCCTCCCGGCTCCGAGGCTGGTGGAAGTTCAAGCAGTAATTATCCTTCCGCACGTGGTCCTGACTCGAGGGCACTGCCATCTGGGGCTCACCCGGGAACACCATCGTGGTTGGAGAGGCCAGGAGATCATGAGTATGGAATTCCCTATTCGATACGGTCGTTGGCTGTTGCTGGTGAAGGAAATAGTAGACTTGTGTCTGAGCTCCGAAATGTGTTAGGACTTATGCGTCGTGGTGGGAGCCTGCGATTTGAGGACGTTATGATCCTCGACCAATCAGTGTTTTCTGGAATCGCTGATATTCATGATCGACACAGGGACATGCGACTTGATGTTGATAACATGTCATATGAGGAATTATTGGCTCTGGAAGAGCGCATTGGAAATGTGAGCACCGGATTGAACGAGGAAACCATATTGAAACTCTTGAAACAGAAGAAGCATTCGGTCGAAACTGGATCTCAGCCAGAGTCGGAAGCAGAACCATGCTGTGTTTGTCAGGAGGAGTACAAGGATGGAGAGGATATCGGCACGCTGGATTGCGGCCACGATTTCCATACAGAATGTGTCAAACAGTGGCTAAAGCACAAGAATCTGTGTCCGATTTGTAAGACAACAGGGTTGGCAACAAAAACAACATAA 2163 0.4665 MQGQRDTIGSLPETLEFDCGSTSSGATTATVNQQICWNNMRNPADNRIPEYILPPSDVNPSYVSPLNHGWQNLSGWSLGEPSYSNTQNEVNINNDQRRELGWPSSISFGAPAGSRQEERRVEPTNAVSMDNTNTTMYVHGANSHMMPPQNLNLNAGMGDSSSANSHHVEHANLPKSIGPVNEHVPPPLIGSGPLMLPSASNSLLFEDTDGRPGCSVDTRRVSCKRKAVERSVGQCSDGGSSSYSQPTDGSAWNTLPTQDYVGGSLGRSASVDRVSARLGLSMGDGPSESIPDSNVAGNPESFHRNFRLRVNPSSQQSSIPVPPPAAFSTGNVIRTSGISPSVPVLPRFHPADNSLDARPVPTVDTMIPQSQPLLVHVPALPRNMQSFRWGGASSSANNHSSNSAIPADNRDNNIPHEDASSRSLPRNLFEHPVFAPGTNLRNLARNPTNRAPSSGNLSIPGNVAAASSSRSGSHSAINPSSASPWVARPNPQHYPRRLSEYVRRSLFPPPGSEAGGSSSSNYPSARGPDSRALPSGAHPGTPSWLERPGDHEYGIPYSIRSLAVAGEGNSRLVSELRNVLGLMRRGGSLRFEDVMILDQSVFSGIADIHDRHRDMRLDVDNMSYEELLALEERIGNVSTGLNEETILKLLKQKKHSVETGSQPESEAEPCCVCQEEYKDGEDIGTLDCGHDFHTECVKQWLKHKNLCPICKTTGLATKTT* 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3829 720 MobiDBLite consensus disorder prediction 1 25 - -
Amo16g3829 720 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 632 714 IPR013083 -
Amo16g3829 720 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 716 IPR045191 GO:0061630
Amo16g3829 720 SMART ring_2 670 710 IPR001841 -
Amo16g3829 720 Pfam Ring finger domain 670 711 IPR001841 -
Amo16g3829 720 MobiDBLite consensus disorder prediction 388 409 - -
Amo16g3829 720 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MBR2-LIKE ISOFORM X1 1 716 - -
Amo16g3829 720 SUPERFAMILY RING/U-box 669 713 - -
Amo16g3829 720 CDD RING-H2_TTC3 669 711 - -
Amo16g3829 720 MobiDBLite consensus disorder prediction 441 487 - -
Amo16g3829 720 MobiDBLite consensus disorder prediction 232 251 - -
Amo16g3829 720 ProSiteProfiles Zinc finger RING-type profile. 670 711 IPR001841 -
Amo16g3829 720 MobiDBLite consensus disorder prediction 388 491 - -
Amo16g3829 720 MobiDBLite consensus disorder prediction 505 549 - -
Amo16g3829 720 MobiDBLite consensus disorder prediction 512 526 - -
Amo16g3829 720 MobiDBLite consensus disorder prediction 234 251 - -
Amo16g3829 720 MobiDBLite consensus disorder prediction 98 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g3829 Amo-Chr16 150055551 150062313 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g3829 1 717 C3H Transcription Factor Family AT2G15530 33.028 3.66e-79 265
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g3829 16 150055551 150062313 Amo20g1828 20 61538081 61543717 ECH
Amo16g3829 16 150055551 150062313 Amo16g3829 16 150055551 150062313 ECH