Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3827 ATGGAACAAGAAGAAGAACCACAACAAAATGAGCCACCTCACTCTCACTCTCAATCTCGGTGCGTGACGCTACCTCCCGGTTGCCGGTTCCATCCTTCGGAGGAGCTTCTATTGCGTTACTACCTGACCAACAAAAACGGCACGGGGAACTGGAATGGTAACGGTGGTTTGGGATTCGATGGTTCTGATTTGATTCGGGAGCTGGATTTTTACGATTACGATCCTTTTGAACTGCCGGATTTTGCGTGCTTTGCGTACGGCTACGGCGGAAGGAGGAGGCACTGGTACTGTTTCACCTCCGTTAGGGTTTCGAGGGGAGAGAGGTGGAAGAGGAAGAGGAAGGTTAAGAGTGGGTTCTGGTTGAGGAGGGGAAGGGTTTCGAATGTTAACGGTGTTGGGGAGAACGTGGTTTTGGGAACGAGGACGAGGTTCGTTTTCTATATGGGTGATTCGGCGAAGAACGGTGCCAGGACGGATTGGGTTTTGTATGAATACGCATTGGTTGATCATGTTATGGCCTCTTATGTTCTTTGCCGGGTATTTAGTAAGCCTCGTTATAAGAATAGTGCATCAGACATCGGCCTGAGTTGTTGTGCAGAAGAGAGTGTATCAGCAGTGCGCCATATTGGTATTCAGCATGATGAACATGTTAAATTGGATGCCGTTGAAGCTAAAGTATGTGATGATATCTCCATTGACCACAACAATGAAATATGTGCTGGTGGAAACAGCGATAATGATAATCAAGTTAAGAATGCACATGATATAGATGCTCTACGTTGTTTGGCGGGTCCTCAGGGCAGTCAGCAGCTATCAATTGCAAACTTCTACATCAGCAATAATCTGAAAAGTCTAGTCAGAAATGGGGCTATCAGTGTCGGGAGTCAATTAGCGTTTCTATCTTCTTTACAATTACCTTCCCCCTTTTTAGATTTGCTAGATTTGAGAACTCATTCATATGATCTTGGTTGCATTCCCCTTTTTTTCCCTGCTAATATCATTATTAATATTAGATTAAATGTGTTATTCTTTCTTCTGAATGGGAAAACATATTACTGTTCAGTAGAAACCGCTATAAGTAAATCTAGCAGTAATATGTCCTTCCATCCAGCTCTTGCTTTCCAGCAGACTTTTGCTTTAGCATGCTCTTTTGCCAGTGAATCTGTTCATTTCATTTTGTAA 1182 0.4357 MEQEEEPQQNEPPHSHSQSRCVTLPPGCRFHPSEELLLRYYLTNKNGTGNWNGNGGLGFDGSDLIRELDFYDYDPFELPDFACFAYGYGGRRRHWYCFTSVRVSRGERWKRKRKVKSGFWLRRGRVSNVNGVGENVVLGTRTRFVFYMGDSAKNGARTDWVLYEYALVDHVMASYVLCRVFSKPRYKNSASDIGLSCCAEESVSAVRHIGIQHDEHVKLDAVEAKVCDDISIDHNNEICAGGNSDNDNQVKNAHDIDALRCLAGPQGSQQLSIANFYISNNLKSLVRNGAISVGSQLAFLSSLQLPSPFLDLLDLRTHSYDLGCIPLFFPANIIINIRLNVLFFLLNGKTYYCSVETAISKSSSNMSFHPALAFQQTFALACSFASESVHFIL* 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3827 393 MobiDBLite consensus disorder prediction 1 21 - -
Amo16g3827 393 PANTHER NAC DOMAIN-CONTAINING PROTEIN 21/22-LIKE ISOFORM X1 21 251 - -
Amo16g3827 393 Gene3D NAC domain 33 187 IPR036093 GO:0003677|GO:0006355
Amo16g3827 393 Pfam No apical meristem (NAM) protein 25 167 IPR003441 GO:0003677|GO:0006355
Amo16g3827 393 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 21 251 - -
Amo16g3827 393 ProSiteProfiles NAC domain profile. 24 183 IPR003441 GO:0003677|GO:0006355
Amo16g3827 393 SUPERFAMILY NAC domain 20 183 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g3827 Amo-Chr16 150033342 150037590 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g3827 23 184 NAC Transcription Factor Family AT1G71930 31.737 1.61e-20 89.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Amo16g3827 NAM 9.4e-20 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g3827 16 150033342 150037590 Amo16g3827 16 150033342 150037590 ECH