Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3817 ATGATTTCACTTACTACTACTACTACTTCACAATTATTTCTAGATCAACGTTCATCACTTCTTGTAGGAGAAGATGATGAATTGAACTTTGGATTAGTACAATCCACAATTTCCTCCAATCTTATTAGTGATGAAAATGAGCATTATTTGTTTCATTCTTTAGATGCTAATCCCAACACAAAAATGTTGCATTATAAGTCACAAGAAGAGAGTAGTTACAATAGCAGCAATTTGAGTGGTGGTGACACTAATTTCTTCAATGCCAACATGGATCTTACAACAAACTACTACTATTCTAGTAATTACCATGATGATCATGTGCTAGCAAATGATGTTTCTATATCCATGGAGTTATGTATGGAGGAGAAGAATCTTGCATGTTTTGCTCCATCAATGGAAGACAATGATGATCATGGATTATTGGAGAATTATGATCATTATCAATGTCATCAAATGGAAAATGTTGATGTTGTGCAGCTCAAGAGGAAGATTGTTGAAGTACCAGAATTGGATGTGTCTGCTGATGAAAACAATACAAGTAACGGATATAAGAATCAAAAGAAAAAAATTTTCGTCGCGAAAGATGAGCAAGATTGCATGAAAAATGAAAAGTCTAGGAAGAGAAAAGTTGTTAGAAATGGGAATGAAGGAGAAGAGAGAAATAATAATGTAGGGTTAGATGGACAGAGCTCAAGTAGTAACATTAACATATGTGAGGATGACAATGCTTCTGAAGAAAACAATGGAGGGGTAACTTCGGTATCTCACTCAAATGGGAAAACAAGAACCATTAGAGGAACAGCAGCAGATCCCCAGAGTCTCTATGCAAGGAAAAGAAGAGAAAGGATAAATGCGCGATTAAGAATTTTGCAGAGTCTTGTTCCAAATGGAACAAAGGTTGATATAAGTACAATGCTTGAAGAGGCAGTTAATTACGTAAAATTTTTGCAGCTCCAAATCAAGCTTTTAAGCTCTGATGATCTATGGATGTATGCTCCTCTTGCTTATAATGGACTTGACATTGGACTCAAACTCAATAACCTCAAGAATTTTTCACCATCACCATGA 1068 0.353 MISLTTTTTSQLFLDQRSSLLVGEDDELNFGLVQSTISSNLISDENEHYLFHSLDANPNTKMLHYKSQEESSYNSSNLSGGDTNFFNANMDLTTNYYYSSNYHDDHVLANDVSISMELCMEEKNLACFAPSMEDNDDHGLLENYDHYQCHQMENVDVVQLKRKIVEVPELDVSADENNTSNGYKNQKKKIFVAKDEQDCMKNEKSRKRKVVRNGNEGEERNNNVGLDGQSSSSNINICEDDNASEENNGGVTSVSHSNGKTRTIRGTAADPQSLYARKRRERINARLRILQSLVPNGTKVDISTMLEEAVNYVKFLQLQIKLLSSDDLWMYAPLAYNGLDIGLKLNNLKNFSPSP* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3817 355 CDD bHLH_AtIND_like 268 330 - -
Amo16g3817 355 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 15 348 - -
Amo16g3817 355 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 267 316 IPR011598 GO:0046983
Amo16g3817 355 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 15 348 - -
Amo16g3817 355 Pfam Helix-loop-helix DNA-binding domain 277 317 IPR011598 GO:0046983
Amo16g3817 355 MobiDBLite consensus disorder prediction 200 273 - -
Amo16g3817 355 MobiDBLite consensus disorder prediction 200 216 - -
Amo16g3817 355 MobiDBLite consensus disorder prediction 217 268 - -
Amo16g3817 355 Gene3D - 267 324 IPR036638 GO:0046983
Amo16g3817 355 SMART finulus 273 322 IPR011598 GO:0046983
Amo16g3817 355 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 272 331 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g3817 Amo-Chr16 149905332 149907435 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g3817 139 348 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G27740 50.000 2.21e-52 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo16g3817 HLH 2.1e-08 No_clan