Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3816 ATGGCGTCCGCCGAGCAGCCACTGAAGAAGCGAAAGCATTACGACACTCTCCCGGAATCCCCACCGCCGCCACCACCGCCGCTGGCACCATCCGAAGAAGTTCCACCACCGCCTTCGCCGCCACAATCTCCTCAAACCCTACTTCGTCCGCCTACTCCTCCTCCTCCGCCTCTGTCACAGGATGAGGTCGTCACCAAGCGGAGGAACAAAGATGAGGTTCGAACCGTGTTTGAGTGCTACCGTCGCATCAAGCTCTTCTTGTCAAAGAAGGAAGGTGCTTTCATCCATGACCTTGAACAGAGCTTCTTCGCTCTCATCAATGCTTCCAGAGGTTGTTTGAGTGCACAAAGAATCGCGGCTGATGTTATTCCTCGATATGCATTCCGCTGTCCAACAGCTTTAGAAGCTGCTGCTAAAGTGGTTATCAATATGTATAACTGGAGTTCCACACTAATCAGTAGAGGAGAAGATGCTGATGGTGTTGCATTTGAAACTGCTAGAGCTTGTATTTTTGGCTTAGCTGATATTTGCTGTGCTGCTTCTTCAGTGGCACCAAAATCTGCTGTAATCAGAGGAATTTGCTCTGCAGTTTTTCAGAATGTGCTATTCTTTTTCATATCTTTACTTGAGGGAAAGGACGCCTTACAGGTGTTCGATAAGAGTTTCCTGAAAATGCAAGATTCCCCTGATGAATTTTCTAAGTTGAAGCAAAAAGTTTTAGATGAAGATGAGCCCTCATTGACTAAATTGTCAAAACTCCATGCAGTATGTTTATTTTGGATATTCTTCTCTTGCCCAAAAGACATGCTTGCAGCTTGTTTGGAGCTCTTAGGCTCTGCCACAAAGGAGGGTGCCTCTGAACAAGGACAATGTTTTCTGAGCCTGGTGACTAGAAATGTTTTGGTTGATGAAGCAGTTTGCCTTCTGGATAATGTTAATGGCGGATCTAAGCCAGGTACAGGTTCAACAGATTCAGCTATCCGCGAAAACGAGGTTGATGAGGAAATAATGACAGATGTCAACCGAGTTGCCGGTGTTGATTCGTCTATTCCAAAGAGTTGCTTGCTCACACTGGTCCTTGACAAAGATCCCTCACTACAGAAATGGATGTCACGCAAATCTAAGAAGTTATTGGACTTGCCTACTACTGCTTCAATGGAAATTACAGCAGTACTTCTAGGAATTCTTGGAAAGTTTGTTCCACAAACTGATTTGGAAGACTACCAACTAGATAGTGATGAAGATAGATCTGATTCTTCGATTTACACAAATAGGAACTATGCGGTACCTAGGATTTCAGAGGAACGTGACAGTATTGGTGAAACATCTGGAAGAGTTTCTCTTGGCACCAACCCTGTATCAAAAGTAGGTTCGCATTTCGACAATGGAGCTTCAAGGCCCATGGGCATTGAGATGGGGGAGGGAGGGAGTATGTCCCATGCTAGATGTTCCACACCTAGGGATTCAGCAACCCATCAAATAACCTCATCTTCAATGAAGACACCATTTGGCTCTAGGAGTAATTCATTTGAAGCTGCTTCAACAAAAAGTCAAACTGTCTGGTGCCTTGATGGGGATCCTGCTGCCATGGATATTGTCTCTGCTTCAACAAGGCTCTGGGTTGGTTTTATACCACCTGACGTGCCTGAAAGCCATATTAGGTTTCAATCAGAAAGATATGGTCAAATTGAACGGTTTGTTTTCTTCCCCATGAAAGGTTTTGCCTTTGTTGAGTACAGAAGAATCATTGATGCAATCAAAGCTAGACACTATCTACCGGGAAACTTCCCGTGTCGTGTAAGATTCATCGATACAGGATTTGGAACTAGGGGTGCAATGAATGGTGTTGCAATTGGCTCTAGTTCTCATATCTATGTTGGAAATATTTCTTCTCAATGGGCCAAGGATGAGATCCTACATGAATCAAGAAAAGTAATCCATAAAGGTCCTCCTGCACTTATTGATCTCAGCTGTGAGTGTGCATTACTTATGGAATTTGAAACTCCTGAAGAAGCTACCTCTGTCATGTTGCGTCTGAGACAGTTTCGAAGAGAAAGAAGCAACTATAACTTACATTTTGGCCCAGGAACAGTTAATGCTGGAATTGGGCACCTGTATATGGACGGTTCAAGGTCTGCATCTGCCCCTTCCCATCCTGACCTTAAAGTTAGCATCCCAACAAACATGTCACATGGTATTTCTGGATCACCTCATGCTCGAACCTTACCCGTGAGCCCTGCTGACAGTTCTCGCACAAGGATGTCTCACTTGTCTTCGTTGCTAGCTTCATTGTGTACAAAATACAATATTAATCAAAACATAGGTCTCCATGATCACTATATGACTGGAACTGGTAACAGTTATGCTCCTTCGATGCGTGATGAAGATACAGCACCATCGAGTACTTTGTGGATAACTATTCCATGGAGTAGCTCTCAATTCCTCACAGATGATGAACTAATGACTATCTGCAATCTTGCTATTGGAGGCTCTGGCTCCATTTTGCGCTTGACACAGGCAAACATGCAGATGCCGTGTGGTTGGTTTGTTGAATGCAGTAATACTGATGGTGCAGTTTCTGTTCTAAAGAATCTTCGTAGTTGTCCAGGGTTGTTCTTCCAAGTAGAATTCAGTAAATCTGGAAATCAGACTGCCGGACCTTCTTCAGCCAAACCAGAGGGCAACTCCATGGAACTAGTATCCCCCAGAACAAATTCCCAGAATCACAGTAGTGGAATACACCGTGCACCTCCACCCCAGTCGAACTGGCATTTTCCTGGTTCCAGTAACATGCCAGAAGTTGGAGCAAGGAAAACTGATGGTTATGATAATGTATCACTAGACACTCATCAAGGAGCTAACATTCAACATATGTACTCTGGAACTCAAGGACCTTCCATTCCGCCACCACAACAAATTCAGTCAGCTCCCTTCATTCGCCCTGTTTATGCCCCTCCAAATGGTCCGTGGGATCCACGTGGAATAAATAATCCTTTACCTGCCAATCACTTCACGCCTGGAGTGATGCCTAATAATCATTTACCATTTATACCTGCTTCAGTAACTCCACTTGCTCACATCCAGGGAACCCCAATGCATCCTTATGGCCAGCTGATGCCCCCACCAGTAATGGCACCACCTTTGGCTTCCTTACCACATCCTCAGCTTGAAATTCCACCTCCACCTCCACCTCCACCTCCACCTGCACGTCTGCCTTCTCCACCACCCTTGCCCCAAACTCAGCCACCCATGGTTCCTCCACCACCTGGTTCTCCTCCACCTCCTCCTCCACCATTGCCTGCTCAGGAAGCAGTTAGTATGGAATGTTCAGGGCAGTCTCTGCAGTATCAGTGGCAGGGGGCTCTTTGTAAAAGCGGGGTTAACTACTGCACAATTTATGCATGCCGAGCAGATTCAAATGTTTGCAAATACACAAATGCCACACCTGAACCTTCTGAGTGGCCCACAAAACTAGACATGACTAAACGCACTGATATTCGACATGTGAAATCAACATTTGCAGCTACACCACCTAACAGGAGGGAAGTGTGCCGTTTAATCCCATCTTCCCCAAGTGAACACAAACGGTTTCAGGATTTCATAACATACTTAAAGCAGAGGGATTGTGCCGGAGTCATTAAAATCCCAGCCGCAAAATCCATGTGGGCAAGGCTGCTCTTCATACTCCCATACTCGCCTGAAACATGCACTTTGCTTTCTATTGCACCACATCCATCTGATTGCCTCATCGCTTTGGTTCTTCCAAAAGAAATGAACTTTGAGTGGGCATGA 3792 0.4533 MASAEQPLKKRKHYDTLPESPPPPPPPLAPSEEVPPPPSPPQSPQTLLRPPTPPPPPLSQDEVVTKRRNKDEVRTVFECYRRIKLFLSKKEGAFIHDLEQSFFALINASRGCLSAQRIAADVIPRYAFRCPTALEAAAKVVINMYNWSSTLISRGEDADGVAFETARACIFGLADICCAASSVAPKSAVIRGICSAVFQNVLFFFISLLEGKDALQVFDKSFLKMQDSPDEFSKLKQKVLDEDEPSLTKLSKLHAVCLFWIFFSCPKDMLAACLELLGSATKEGASEQGQCFLSLVTRNVLVDEAVCLLDNVNGGSKPGTGSTDSAIRENEVDEEIMTDVNRVAGVDSSIPKSCLLTLVLDKDPSLQKWMSRKSKKLLDLPTTASMEITAVLLGILGKFVPQTDLEDYQLDSDEDRSDSSIYTNRNYAVPRISEERDSIGETSGRVSLGTNPVSKVGSHFDNGASRPMGIEMGEGGSMSHARCSTPRDSATHQITSSSMKTPFGSRSNSFEAASTKSQTVWCLDGDPAAMDIVSASTRLWVGFIPPDVPESHIRFQSERYGQIERFVFFPMKGFAFVEYRRIIDAIKARHYLPGNFPCRVRFIDTGFGTRGAMNGVAIGSSSHIYVGNISSQWAKDEILHESRKVIHKGPPALIDLSCECALLMEFETPEEATSVMLRLRQFRRERSNYNLHFGPGTVNAGIGHLYMDGSRSASAPSHPDLKVSIPTNMSHGISGSPHARTLPVSPADSSRTRMSHLSSLLASLCTKYNINQNIGLHDHYMTGTGNSYAPSMRDEDTAPSSTLWITIPWSSSQFLTDDELMTICNLAIGGSGSILRLTQANMQMPCGWFVECSNTDGAVSVLKNLRSCPGLFFQVEFSKSGNQTAGPSSAKPEGNSMELVSPRTNSQNHSSGIHRAPPPQSNWHFPGSSNMPEVGARKTDGYDNVSLDTHQGANIQHMYSGTQGPSIPPPQQIQSAPFIRPVYAPPNGPWDPRGINNPLPANHFTPGVMPNNHLPFIPASVTPLAHIQGTPMHPYGQLMPPPVMAPPLASLPHPQLEIPPPPPPPPPPARLPSPPPLPQTQPPMVPPPPGSPPPPPPPLPAQEAVSMECSGQSLQYQWQGALCKSGVNYCTIYACRADSNVCKYTNATPEPSEWPTKLDMTKRTDIRHVKSTFAATPPNRREVCRLIPSSPSEHKRFQDFITYLKQRDCAGVIKIPAAKSMWARLLFILPYSPETCTLLSIAPHPSDCLIALVLPKEMNFEWA* 1264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3816 1263 MobiDBLite consensus disorder prediction 18 60 - -
Amo16g3816 1263 MobiDBLite consensus disorder prediction 1 67 - -
Amo16g3816 1263 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 537 631 IPR000504 GO:0003723
Amo16g3816 1263 PANTHER NUCLEIC ACID BINDING PROTEIN 1 1262 - -
Amo16g3816 1263 Pfam SPOC domain 1112 1254 IPR012921 -
Amo16g3816 1263 CDD RRM3_Spen 539 604 - -
Amo16g3816 1263 MobiDBLite consensus disorder prediction 880 928 - -
Amo16g3816 1263 MobiDBLite consensus disorder prediction 1046 1102 - -
Amo16g3816 1263 SMART rrm1_1 538 601 IPR000504 GO:0003723
Amo16g3816 1263 MobiDBLite consensus disorder prediction 1046 1106 - -
Amo16g3816 1263 MobiDBLite consensus disorder prediction 438 509 - -
Amo16g3816 1263 MobiDBLite consensus disorder prediction 443 458 - -
Amo16g3816 1263 PANTHER ACTIVATING SIGNAL COINTEGRATOR 1 COMPLEX SUBUNIT 2 ASC-1 COMPLEX SUBUNIT P100 1 1262 - -
Amo16g3816 1263 MobiDBLite consensus disorder prediction 482 509 - -
Amo16g3816 1263 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 539 594 IPR000504 GO:0003723
Amo16g3816 1263 MobiDBLite consensus disorder prediction 880 942 - -
Amo16g3816 1263 MobiDBLite consensus disorder prediction 1 17 - -
Amo16g3816 1263 Gene3D - 528 609 IPR012677 -
Amo16g3816 1263 SUPERFAMILY RNA-binding domain, RBD 526 596 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g3816 Amo-Chr16 149890772 149900868 Dispersed/Transposed