Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3812 ATGGGGACCGAGAGCACGACAAATTACTCTTATTTGGGGCGCAGCATAAGCCATCTCACCATCAACGAGGAGTCCTCTTCCTCCGCCTTCAGTGATTGCAATAGCGATAGATCCGGTGAATTCTCCGCTGCCTCTTCTCAGACTCGCCGCCTCCTACTTGCGTGTGCCACCGACAACTCTGACGAATTAATCCGACAGCTCGTGTCTGATCTGGGCTCTGATTCCGTCAATGAGAAAAAACAAGCAGCCATGGAGATCCGCCTCCTTGCGAAGAATAAGCCGGAGAATCGAATTAGAATCGCCGAAGCCGGAGCGATCAAACCGTTAATTTCGCTTATTTCGTCGCAAGACCTTCAACTTCAGGAGTACGGCGTCACAGCTATTCTCAACTTATCCCTATGTGACGAGAACAAAGACGCCATAGCTTCTGCCGGCGCGATTCGATCTCTGGTTCGGGTGCTGAGTTCAGGAAATTCAACAGCGAAGGAGAACGCGGCGTGCGCGCTTCTCCGACTGTCGCAGGTGGATGCTTATAAGCCGGCAATAGGAAGGGCGGGCGCAATTCCGCCGCTTGTAAAGCTTCTGGAAATCGGGAGTGGCCGCGGAAAGAAGGACGCGTCAACTGCTCTGTACTCGCTCTGTTCTACTAAAGATAACAAGGTAAGGGCAGTGAAGGCAGGGATAATGAGGGTGCTGGTGGAGTTGATGGCAGACTTGGAGGGAGACATGGTAGACAAATCAGCTTACGTGGCGAGCGTAGTGGTGACAGTAGCGGAGGGAAGGGCTGCGTTTGTGGCAGAAGGGGGGATTCCAGTGCTGGTAGAGATAGTGGAGGTTGGGACGCAGAGGCAAAAAGAAATTGCTGTGGTTATACTTTTGCAGATTTGTGAAGAGAGTGCTGCTTACAGAAAGCTTGTGTTTGACGAAAGCGCCATCCCTCCTTTGGTTGCTTTGTCCCAATCTGGCACCAATCGCGCCAAAGAAAAGGCAGAGAAACTGATTGAGCTTCTAAGGCAACCAAGATCCAACAATGGCACTGCTCGTGCGTCAGAAGTGTCACTGTGA 1065 0.5183 MGTESTTNYSYLGRSISHLTINEESSSSAFSDCNSDRSGEFSAASSQTRRLLLACATDNSDELIRQLVSDLGSDSVNEKKQAAMEIRLLAKNKPENRIRIAEAGAIKPLISLISSQDLQLQEYGVTAILNLSLCDENKDAIASAGAIRSLVRVLSSGNSTAKENAACALLRLSQVDAYKPAIGRAGAIPPLVKLLEIGSGRGKKDASTALYSLCSTKDNKVRAVKAGIMRVLVELMADLEGDMVDKSAYVASVVVTVAEGRAAFVAEGGIPVLVEIVEVGTQRQKEIAVVILLQICEESAAYRKLVFDESAIPPLVALSQSGTNRAKEKAEKLIELLRQPRSNNGTARASEVSL* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3812 354 Pfam Armadillo/beta-catenin-like repeat 178 215 IPR000225 GO:0005515
Amo16g3812 354 Pfam Armadillo/beta-catenin-like repeat 135 173 IPR000225 GO:0005515
Amo16g3812 354 Pfam Armadillo/beta-catenin-like repeat 94 132 IPR000225 GO:0005515
Amo16g3812 354 Gene3D - 56 180 IPR011989 -
Amo16g3812 354 Gene3D - 181 247 IPR011989 -
Amo16g3812 354 PANTHER U BOX DOMAIN-CONTAINING 1 346 - -
Amo16g3812 354 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 104 146 IPR000225 GO:0005515
Amo16g3812 354 SUPERFAMILY ARM repeat 61 336 IPR016024 -
Amo16g3812 354 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 4-LIKE ISOFORM X1 1 346 - -
Amo16g3812 354 SMART arm_5 93 133 IPR000225 GO:0005515
Amo16g3812 354 SMART arm_5 134 174 IPR000225 GO:0005515
Amo16g3812 354 SMART arm_5 256 297 IPR000225 GO:0005515
Amo16g3812 354 SMART arm_5 175 215 IPR000225 GO:0005515
Amo16g3812 354 Gene3D - 248 348 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g3812 Amo-Chr16 149843299 149846315 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g3812 42 344 U-box Gene Family AT2G23140 48.515 2.26e-81 258
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g3812 16 149843299 149846315 Amo16g3812 16 149843299 149846315 ECH
Amo16g3812 16 149843299 149846315 Amo08g0793 08 14070379 14072525 PCT
Amo16g3812 16 149843299 149846315 Amo17g2872 17 130778601 130781052 PCT
Amo08g0793 08 14070379 14072525 Amo16g3812 16 149843299 149846315 PCT
Amo17g2872 17 130778601 130781052 Amo16g3812 16 149843299 149846315 PCT