Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g1282 ATGGAAGGAATATCTGCGAATTCTTCATGCACAGCAAGGCCAGTGTTGGAGAAGAAAGCAAGGCCACAAGAGCAATTGAACTGTCCAAGGTGCAATTCAACCAACACAAAGTTTTGCTACTATAACAACTATAGCCTCACTCAGCCCAGGTACTTCTGCAAGACTTGCAGAAGGTACTGGACTGAGGGAGGCTCTCTTCGGAACGTCCCTGTCGGTGGCGGTTCAAGGAAGAATAAGAAGATCATCTCATCATCAGCTTCATCCTCCTCATCTTCTCTATCTTCATCTTCTGCACCAAAGGTTCCAGATTTGAACCCACCCAGCCTCGCTGCACAAAACCCTAATAATAAAATGATGCAAGGAGGAGGGCATGATCTCAATTTAGCTTTTCCAGCTATGGAGAACTTTCATCATCATGCTTTGTCTGCGTATGTTGAGATTCCGAAACTCGAAACCGGAGGAGGAGGAGGAGGAGGTGATGGATCTTCTTCTACTGCTGCTGCTGCTCCAAGTTCTCTTTCAGCGATTGAGTTGCTAAGGTCTTCTGGGATGGCTGCTCCTAGGGGAGGCTTGAATAACATTCCTTATGTCCATTCTTCATTGATGCCAAATTCAAATGCTCTTTACCCTTCTGGGTTTCCCATGCAAGAGATTAAGCCCAGTCTTGGGTTTTCTTTGGTTGATGGGCTTGGAAGTAATGGTGGGCAAGTAGAGAATAATGATAATCATAATAATGGGAGGCTCCTGTTCCCTTTTGGAGAAATCAAGCATCACCATCATCATCAGCTTTCAGCGGCAGGTGTTGAACTTGACCAAAACAACAAACAACAAGCTGGGAACAATTCAACTGGGTATTGGACTGGTATTATTGGTGAAGGCTCATCATGGTAA 891 0.4512 MEGISANSSCTARPVLEKKARPQEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKKIISSSASSSSSSLSSSSAPKVPDLNPPSLAAQNPNNKMMQGGGHDLNLAFPAMENFHHHALSAYVEIPKLETGGGGGGGDGSSSTAAAAPSSLSAIELLRSSGMAAPRGGLNNIPYVHSSLMPNSNALYPSGFPMQEIKPSLGFSLVDGLGSNGGQVENNDNHNNGRLLFPFGEIKHHHHHQLSAAGVELDQNNKQQAGNNSTGYWTGIIGEGSSW* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g1282 296 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN-RELATED 11 291 - -
Amo16g1282 296 ProSitePatterns Zinc finger Dof-type signature. 28 64 IPR003851 GO:0003677|GO:0006355
Amo16g1282 296 MobiDBLite consensus disorder prediction 78 120 - -
Amo16g1282 296 ProSiteProfiles Zinc finger Dof-type profile. 26 80 IPR003851 GO:0003677|GO:0006355
Amo16g1282 296 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 11 291 IPR045174 GO:0003700|GO:0006355
Amo16g1282 296 MobiDBLite consensus disorder prediction 69 123 - -
Amo16g1282 296 Pfam Dof domain, zinc finger 24 80 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g1282 Amo-Chr16 22044403 22046220 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g1282 18 296 C2C2-Dof Transcription Factor Family AT3G61850 47.297 4.61e-69 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Amo16g1282 zf-Dof 3.1e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g1282 - - gmx:100793115 331.643
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g1282 16 22044403 22046220 Amo12g0124 12 1846651 1847580 PCT
Amo12g0124 12 1846651 1847580 Amo16g1282 16 22044403 22046220 PCT