Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo15g1197 ATGGCGTACGCAGCRATGAAGCCCACCAAACCCGGCTTGGAGGAGTCACAAGATCAGATCCACAAGATCAGAATCACCCTCTCCTCCAAGCACGTCAAAAATCTCGAGAAGGTTTGCTCTGACTTGGTTCGTGGTGCCAAGGACAAGCGCCTCAGGGTGAAGGGACCCGTGAGGATGCCCACTAAGGTTCTTCACATCACTACTAGGAAATCCCCTTGTGGTGAAGATGTTGTTAAGCAGATTACCTCTATCACAATTGAGCCTGGTGTCGAGGTTGAGGTGACAATTGCAGATGCTTAA 300 0.5 MAYAAMKPTKPGLEESQDQIHKIRITLSSKHVKNLEKVCSDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEDVVKQITSITIEPGVEVEVTIADA* 100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo15g1197 99 PANTHER RIBOSOMAL PROTEIN S20, PUTATIVE, EXPRESSED-RELATED 76 98 - -
Amo15g1197 99 Pfam Ribosomal protein S10p/S20e 24 77 IPR027486 -
Amo15g1197 99 SMART Ribosomal_S10_2 24 95 IPR027486 -
Amo15g1197 99 PRINTS Ribosomal protein S10 family signature 57 72 IPR001848 GO:0003735|GO:0005840|GO:0006412
Amo15g1197 99 PRINTS Ribosomal protein S10 family signature 22 35 IPR001848 GO:0003735|GO:0005840|GO:0006412
Amo15g1197 99 ProSitePatterns Ribosomal protein S10 signature. 46 61 IPR018268 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Amo15g1197 99 PANTHER RIBOSOMAL PROTEIN S20, PUTATIVE, EXPRESSED-RELATED 1 77 - -
Amo15g1197 99 PANTHER 30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER 1 77 IPR001848 GO:0003735|GO:0005840|GO:0006412
Amo15g1197 99 PANTHER 30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER 76 98 IPR001848 GO:0003735|GO:0005840|GO:0006412
Amo15g1197 99 Gene3D Ribosomal protein S10 domain 3 76 IPR036838 -
Amo15g1197 99 SUPERFAMILY Ribosomal protein S10 22 96 IPR036838 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo15g1197 Amo-Chr15 94733066 94734224 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo15g1197 1 99 Cytoplasmic Ribosomal Protein Gene Family AT3G47370 71.311 2.21e-53 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo15g1197 K02969 - cpap:110823078 178.333