Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo15g0963 ATGGGTAGAGGGAAGGTGGAGCTGAAGAGGATTGAGAACAAGATAAACAGGCAAGTGACGTTTGCAAAGAGAAGAAACGGTTTGCTGAAGAAGGCTTATGAGCTTTCTATCCTCTGTGATGCCGAAGTTGCTCTCATTATCTTCTCCAACCGTGGCAAGCTCTATGAGTTCTGCAGCACTTCTAGCATGGCGAAGACACTTGAACGGTACCAGAAATGCAGTTATGGAGCCTTGGAAGTAAATCACCAACCTGCTGTGGAGACACAGAGGCGCTATCAAGAGTATCTCAAGCTGAAATCAAAAGTTGAGGCACTACAGAAGACTCAAAGAAATCTCCTTGGGGAAGAATTGGATAACTTAGATGTTAACGAGCTTGAACGGCTTGAGCGTCAGCTGGACTCTTCATTGAAGCAAATTAGGTCTAACAAGACACAACTTTTGCTCGACCAACTCTCGGATTTGCAAAGAAAGGAAGAGATGCTGTTGGAAACAAATAATGTCCTCCGGAGCAAGTTGGAGGAAATTAATATGGCGATTCAACCAACATGGGAAGCTAGGGAGCAAAATGCTCCCTACAGCCGACACCCTCAGCAATCAGAGGGATACTATGAGACAACACAATGCAATAGCACATTACAAATTGGATACGGTTCTTCGGTGACAAATGATGCAGTAGGTGGTGCAGGAACATCAACCCAAAATGCTAGTGAATTCTTGCATGGATGGATGGAAGTATAA 738 0.4444 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSILCDAEVALIIFSNRGKLYEFCSTSSMAKTLERYQKCSYGALEVNHQPAVETQRRYQEYLKLKSKVEALQKTQRNLLGEELDNLDVNELERLERQLDSSLKQIRSNKTQLLLDQLSDLQRKEEMLLETNNVLRSKLEEINMAIQPTWEAREQNAPYSRHPQQSEGYYETTQCNSTLQIGYGSSVTNDAVGGAGTSTQNASEFLHGWMEV* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo15g0963 245 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Amo15g0963 245 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Amo15g0963 245 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Amo15g0963 245 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Amo15g0963 245 PANTHER MADS BOX PROTEIN 1 227 - -
Amo15g0963 245 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Amo15g0963 245 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Amo15g0963 245 SUPERFAMILY SRF-like 2 83 IPR036879 GO:0003677|GO:0046983
Amo15g0963 245 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 1 227 - -
Amo15g0963 245 Pfam K-box region 87 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Amo15g0963 245 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Amo15g0963 245 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Amo15g0963 245 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Amo15g0963 245 Coils Coil 122 145 - -
Amo15g0963 245 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo15g0963 Amo-Chr15 71157576 71180831 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Amo15g0963 K-box 6.4e-26 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo15g0963 15 71157576 71180831 Amo15g0963 15 71157576 71180831 ECH
Amo15g0963 15 71157576 71180831 Amo14g3842 14 143935170 143940484 ECH