Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo14g3842 ATGGGGAGGGGAAGAGTTGAGTTGAAGAGGATAGAGAACAAGATAAACAGGCAAGTCACATTTGCAAAGAGAAGGAATGGTCTTCTCAAGAAAGCTTATGAGTTATCTGTTCTTTGTGATGCTGAGGTTGCCCTCATCATCTTCTCCAACAGAGGAAAACTCTATGAGTTTTGCAGCAGCTCTAGCATGCTCAAAACACTTGAGAGGTATCAGAAGTGCAGTTATGGTGCTGTGGAAGTTAGCAAGCCTGCCAAAGAACTTGAGAATAGCTACCGTGAGTACTTGAAGCTGAAAGCAAGATTTGAATCTCTTCAAAGGACTCAAAGAAATCTTCTAGGGGAAGATTTGGGCCCATTGGGTACCAAAGATCTTGAGCAACTTGAAAGGCAATTGGATTCTTCTCTGAAGCAAGTGAGATCCACAAAGACACAATTTATGCTGGATCAATTAACTGATCTTCAAAATAAGGAGCAGATCTTGGTAGATGTCAACAGAACCTTGAGCATGAAGTTGGATGAAATCAATTCAAGGAATCAATATAGGCAGCAATCATGGGAAGCTGGTGATCAAAGTATGCATCAATATGCTGCTCCACATAATGCTCACTCATCTCAAGGCTTCTTCCGGCCTCTGGAATGCAACCCCACTTTGCAGATTGGCAGTGACTATAGGTACAATGGAGTAGGGTCAGATCAAATAACTGCTACAACAACAACTCAAGCTCAACAAGTGAGTGGTTTCATTCCTGGATGGATGCTTTGA 762 0.4226 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCSYGAVEVSKPAKELENSYREYLKLKARFESLQRTQRNLLGEDLGPLGTKDLEQLERQLDSSLKQVRSTKTQFMLDQLTDLQNKEQILVDVNRTLSMKLDEINSRNQYRQQSWEAGDQSMHQYAAPHNAHSSQGFFRPLECNPTLQIGSDYRYNGVGSDQITATTTTQAQQVSGFIPGWML* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo14g3842 253 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Amo14g3842 253 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Amo14g3842 253 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 239 - -
Amo14g3842 253 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Amo14g3842 253 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Amo14g3842 253 Pfam K-box region 85 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Amo14g3842 253 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Amo14g3842 253 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Amo14g3842 253 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Amo14g3842 253 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Amo14g3842 253 PANTHER DEVELOPMENTAL PROTEIN SEPALLATA 1 1 239 - -
Amo14g3842 253 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Amo14g3842 253 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Amo14g3842 253 Coils Coil 84 107 - -
Amo14g3842 253 Coils Coil 124 144 - -
Amo14g3842 253 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo14g3842 Amo-Chr14 143935170 143940484 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Amo14g3842 K-box 2e-27 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo14g3842 14 143935170 143940484 Amo11g2418 11 128754692 128762562 ECH
Amo14g3842 14 143935170 143940484 Amo20g3155 20 136602739 136610804 ECH
Amo14g3842 14 143935170 143940484 Amo14g3842 14 143935170 143940484 ECH
Amo15g0963 15 71157576 71180831 Amo14g3842 14 143935170 143940484 ECH
Amo20g3499 20 145105472 145117984 Amo14g3842 14 143935170 143940484 PCT