Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g5635 ATGAAGATGGTAGATAACAAGGACCCTGCAATTACTCTCTTTGGGAAGAAGATTCCCTTTCCCGGTGAAGCTGCTCTCAATGCCGCGGAATTAGAGGATGATGAGGTGGACAAACAAGTAGGACACAAGGATGATGGAGCTGATGAAGTTACTGAGAAAAAGAAAGAGGCTGATCCTTCTCGAAATGGAAATGCAGAGATCAATAAAAGAAAGGATTGGGGTGTTCAGAACCCAAAAACACCATCCATAGAGGAAGAAAGTGCAAAAATAAAGAAGGAGCAAAGCGATGCAGAGCAAGAGAAGGCAGTGAAGAAGCCGGATAAAGTGCTTCCATGTCCGCGCTGCAATAGCATGGACACCAAGTTCTGCTACTACAACAACTACAACGTCAACCAGCCGCGCTACTTCTGCAAGGCGTGCCAAAGATACTGGACTGCAGGCGGCACCATGAGGAACGTGCCGGTTGGGGCAGGCAGGAGAAAGAACAAGAACAGCGCCAGCGCCTCCCACTATCGCCACATCAACATCTCTGATGGGACCTTGAAATCCAGTGGCAGAGTCCTCAGCTTTGGATTGGATACACCACCACCACCCATATGTGATTCCATGGCGTCTGTCCTCAACGGTTTTCATGGAATTGAGGATCAAAGTGGAGAAAATGGCGATGACTGCTCGAGTGCATCTTCCATTACCATGGAGGAAACAGGAAAAACCGCATCCCAAGAGCCTTTAGCACAAAGCCCTCCCCAAGTCCCATGCATTCCTAGTGTTCCTTGGCCTTATCCCTGGAATTCTGCTCTGTGTCCTCCTGGATTTCCCATTTCATTCTACCCGGCGCCTCTTTGGAATTGGAATGTTCCGTGGTTCCCCTCACATCCATCTACTCCAAACTCTCCAACTCTAGGGAAGCACTCCAGGGATGATGGTGATGATGACACTGTCAAGCAAGACTATAGGCGAAAGGAAGAACCTCCAAGGCAGAGAAATGGGTGTGTTTTGGTTCCCAAAACTTTAAGAATTGATGATCCAAGTGAAGCTGCAAAGAGTTCTATATGGGCAACTCTAGGAATCAAGAATGAATGTGTCATTGGGGGTGGAATGTTTAAGGCTTTCCGATCAAACAAGGAAGAGAAGAATAAAGTGGTTGAAACCTCGCCAGTGTTGCTGGCTAACCCTGCAGCCTTGTCTAGATCCCTTCATTTTCATGAGAACTCCTGA 1218 0.477 MKMVDNKDPAITLFGKKIPFPGEAALNAAELEDDEVDKQVGHKDDGADEVTEKKKEADPSRNGNAEINKRKDWGVQNPKTPSIEEESAKIKKEQSDAEQEKAVKKPDKVLPCPRCNSMDTKFCYYNNYNVNQPRYFCKACQRYWTAGGTMRNVPVGAGRRKNKNSASASHYRHINISDGTLKSSGRVLSFGLDTPPPPICDSMASVLNGFHGIEDQSGENGDDCSSASSITMEETGKTASQEPLAQSPPQVPCIPSVPWPYPWNSALCPPGFPISFYPAPLWNWNVPWFPSHPSTPNSPTLGKHSRDDGDDDTVKQDYRRKEEPPRQRNGCVLVPKTLRIDDPSEAAKSSIWATLGIKNECVIGGGMFKAFRSNKEEKNKVVETSPVLLANPAALSRSLHFHENS* 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g5635 405 ProSiteProfiles Zinc finger Dof-type profile. 110 164 IPR003851 GO:0003677|GO:0006355
Amo13g5635 405 PANTHER CYCLIC DOF FACTOR 1 3 404 - -
Amo13g5635 405 MobiDBLite consensus disorder prediction 295 329 - -
Amo13g5635 405 MobiDBLite consensus disorder prediction 303 327 - -
Amo13g5635 405 ProSitePatterns Zinc finger Dof-type signature. 112 148 IPR003851 GO:0003677|GO:0006355
Amo13g5635 405 Coils Coil 83 103 - -
Amo13g5635 405 MobiDBLite consensus disorder prediction 211 249 - -
Amo13g5635 405 MobiDBLite consensus disorder prediction 219 247 - -
Amo13g5635 405 MobiDBLite consensus disorder prediction 31 104 - -
Amo13g5635 405 MobiDBLite consensus disorder prediction 31 68 - -
Amo13g5635 405 MobiDBLite consensus disorder prediction 84 104 - -
Amo13g5635 405 PANTHER CYCLIC DOF FACTOR 2 3 404 IPR045174 GO:0003700|GO:0006355
Amo13g5635 405 Pfam Dof domain, zinc finger 107 164 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g5635 Amo-Chr13 158217141 158219676 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g5635 3 403 C2C2-Dof Transcription Factor Family AT3G47500 47.210 1.12e-114 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Amo13g5635 zf-Dof 1.7e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g5635 - - aip:107629495 840.106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g4866 13 147443273 147446923 Amo13g5635 13 158217141 158219676 ECH
Amo13g5635 13 158217141 158219676 Amo13g5635 13 158217141 158219676 ECH