Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g5433 ATGTTAGACAACACCATCAATACTGCTTCTTGTTCTTCCGATGCCCAAAACCTCCCTAACAAAAGAAAAAGAAGACCCGCTGGAACCCCTGATCCAGATGCAGAAGTGGTGTCTCTGTCTCCCAAGACGCTGCTGGAATCGGATCGTTACGTGTGTGAGATCTGCAACCAAGGGTTCCAGAGGGACCAGAACCTGCAAATGCATAGGAGGAGGCACAAGGTGCCATGGAAGCTTCTCAAGAGGCAAGGAGGAGGCGGTACAACCATGATGAAGAAGAAGGTGTTCGTGTGTCCGGAACCCAGCTGCTTGCACCATGACCCGTGCCACGCGCTGGGTGACCTGGTGGGGATCAAGAAACACTTCAGAAGAAAGCACAGCAACCACAAGCAGTGGGTCTGCCATAAGTGCTCCAAGGGTTACGCCGTTCAATCCGATTACAAAGCTCACATCAAAACCTGTGGCACCCGTGGCCATTCCTGTGACTGTGGCCGCGTCTTCTCCAGGGTGGAGAGTTTCATAGAACACCAGGATGCGTGCACTGTGAGGCAGCACCGACCACTGCAACCAGCATGCTCTTCAAGAACAGCTTCAAGCACAAGTCCATCCAGTGACGCTAATTTTACCGTCACTGCCCCACTGCAACCACTTCCACCACCACCACCACCACTGCCACCACCTTCAGAGATTCACAGGAACAATAGTAATACTCACAACTTGGAACTTCAGCTCCTACCTACTTCAATAAACTCTCATCAAAACCACGAAACCCGCTTGAGACTCGCAATAGGTGGGGACAATGGGAGGAGTGTTGAAGAAGAAAGGAACAATAACAATAGTGTAATGATGGTGGGTGATTCTTCTTCCACATTGGAAGTGGCAAGGTTGAAGGAGTGTGCAGGACAGGAGCTGAAGTTGGCAATGGCGGAAAAGGCCTATGCAGAAGAGGCAAGGAGAGAAGCGAAACGGCAGATTGAGATAGCTGAGCTTGAGTTTGAGAATGCAAAGAGGATAAGGAAGCAAGCACAAGCTGAGCTTGGAAAGGCTGAAGCTTTGAGAAAGCAAGCCATCAAGAAGATGACTTCAACTCTCATGGAGATAACATGCCATGCTTGCAAGCAAAACTTTCACTCTTCCAACAATGGCGTTGGGGTTCCGTCTGAAGAGACCTCCATTGTAATGAGTTACATGTCATCAGCAAACAACACTGATGATGGTGAAGCAGAATAG 1227 0.4955 MLDNTINTASCSSDAQNLPNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRQGGGGTTMMKKKVFVCPEPSCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCHKCSKGYAVQSDYKAHIKTCGTRGHSCDCGRVFSRVESFIEHQDACTVRQHRPLQPACSSRTASSTSPSSDANFTVTAPLQPLPPPPPPLPPPSEIHRNNSNTHNLELQLLPTSINSHQNHETRLRLAIGGDNGRSVEEERNNNNSVMMVGDSSSTLEVARLKECAGQELKLAMAEKAYAEEARREAKRQIEIAELEFENAKRIRKQAQAELGKAEALRKQAIKKMTSTLMEITCHACKQNFHSSNNGVGVPSEETSIVMSYMSSANNTDDGEAE* 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g5433 408 MobiDBLite consensus disorder prediction 186 210 - -
Amo13g5433 408 PANTHER ZINC FINGER PROTEIN SHOOT GRAVITROPISM 5 12 406 - -
Amo13g5433 408 MobiDBLite consensus disorder prediction 1 37 - -
Amo13g5433 408 Pfam Zinc finger, C2H2 type 50 72 IPR013087 -
Amo13g5433 408 Pfam Zinc finger, C2H2 type 132 152 IPR013087 -
Amo13g5433 408 SUPERFAMILY beta-beta-alpha zinc fingers 47 73 IPR036236 -
Amo13g5433 408 Coils Coil 303 358 - -
Amo13g5433 408 ProSitePatterns Zinc finger C2H2 type domain signature. 52 72 IPR013087 -
Amo13g5433 408 ProSiteProfiles Zinc finger C2H2 type domain profile. 50 72 IPR013087 -
Amo13g5433 408 MobiDBLite consensus disorder prediction 184 225 - -
Amo13g5433 408 PANTHER OS03G0310200 PROTEIN 12 406 IPR039288 GO:0009630
Amo13g5433 408 Gene3D Classic Zinc Finger 40 127 - -
Amo13g5433 408 SMART c2h2final6 131 158 IPR013087 -
Amo13g5433 408 SMART c2h2final6 50 72 IPR013087 -
Amo13g5433 408 SMART c2h2final6 95 125 IPR013087 -
Amo13g5433 408 MobiDBLite consensus disorder prediction 1 17 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g5433 Amo-Chr13 155237394 155238898 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g5433 21 408 C2H2 Transcription Factor Family AT2G01940 58.537 3.30e-149 429
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Amo13g5433 zf-C2H2 0.0038 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g5433 13 155237394 155238898 Amo13g5433 13 155237394 155238898 ECH