Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g5432 ATGGAGAACAACAACAACAAAAGAAACCCACTTCCCCATTTTCCACGTCTTACTCTTACTACTATTACACTCATGATCTTCCTTGTTACGATGATGTTTCCTGTGACTGAAGAAGCTGCAGCACCAGTTTCTTCTTCCATCAAGACCGATGAACAGGCCCTTCTCATGTTCAAAAAGATGGTTCAAAAAGATGAAACTGGAGCTTTGTCAGGTTGGCAGCTCAACAGGAATCCATGCACCTGGTTTGGAGTTTCATGCACTCATGGAAGAGTCACTCAGCTTGATCTCAGTGGCCATGGTTTATCCGGAACCATCACTCTTGACCCTCTATCTTCTCTAGACATGTTGTCTGTTCTGAAACTTTCTCTCAATTCATTCTCTGTAAATTCCACTTCCTTGCTTACCCTCCCTTACAGTTTGACACAGCTTGATCTCTCTTTTGCCGGAGTTTCAGGTCCAATCCCTGACAACTTCTTCTCAAGGTGTCCAAATCTTGTTGTTGTGAACCTCTCTTACAACAACATGACTGGCCCTATCCCTGATAATTTCTTGCAAAATTCTGATAAGTTGCAGTCTCTTGATCTCTCTTCCAACAATTTATCAGGCTCAATATCTGGCCTCAAAATTGATTGCAACTCCTTGTTGCAGCTTGATCTATCTGAGAACCGTTTATCAGATTCAATTCCAATCTCTCTGTCAAACTGCACCAGCCTCAAGAGTTTGAACTTGGGGAACAATTTGATTTCTGGTGAGATTCCAAAGGCTTTGGGGAATCTGAACAGCCTACAGACTTTGGATCTTTCAAGGAATCAACTCATTGGTTGGATCCCTTTTGAGTTTGGAAATGTGTGTGCTTCCCTTGTCGAACTTAGGCTCTCTTTCAACAACCTTACAGGTTCAATACCATCAAGTTTCTCTTCTTGCACTTGGCTGCAGCTTCTTGATATATCCAACAACAACATGTCAGGTCCATTGCCAGATTCAATCTTTCATAACCTCGGATCATTGCAGGAATTAAGGCTGGGAAACAATGCAATCTCAGGGCCATTCCCATCTTCAATATCTTCCTGCAAGAAACTGAGGATTGTGGATTTTAGCTCAAACAAATTCTATGGATCTATCCCCATAGATATATGTCCAGGTGCAGCATCACTTGAGGAGCTGAGAATGCCAGATAATCTCATAACTGGGGAAATTCCATCTCAACTGTCAAAATGCTCACAGTTAAAGACACTTGATTTTAGTCTCAACTATCTCAATGGTTCAATCCCTGAGGAGCTTGGACAGCTTGAGAATCTTGAGCAGCTGATAGCATGGTTCAATGGCTTGGAAGGTAAGATTCCACCAAAGTTGGGGAAATGCAAGAAGCTCAAGGATCTTATACTGAACAATAATCACTTAACTGGTGAAATTCCCAGTGAGTTGTTCAACTGCAGCAACCTTGAATGGATATCACTCACAAGCAATGAGCTCAGCGGCGAGATACCGCGCGAGTTTGGCCTATTGACAAGGCTGGCTGTTCTGCAGCTTGGAAACAACAGCTTCACCGGGCAGATACCGGGGGAGCTGGCCAATTGCAGCAGTTTGGTGTGGTTGGACTTGAACAGCAACAAGCTCACAGGTGAGATTCCACCAAGACTTGGAAGGCAGCAAGGAGCAAAGTCATTGTTTGGAATTTTGTCAGGAAACACTTTGGTGTTTGTGAGGAATGTTGGAAACTCGTGCAAAGGTGTTGGGGGTTTGTTGGAATTCTATGGAATAAGGCCTGAGAGACTCTTGCAGGTTCCAACACTAAGGACCTGTGATTTCACAAGGCTGTATTCAGGTCCTGTTCTTAGTCTTTTCACAAAGTATCAGACTCTGGAGTATCTTGATCTCTCCTACAACGAGCTCCGAGGAAGAATCCCCCAAGAATTCGGGGACATGGAGGCCCTGCAGGTTCTTGAGTTGTCTCACAATCAGTTATCTGGAGAAATCCCTTCAACATTAGGCCAGCTAAAGAATTTGGGAGTGTTTGATGCATCACACAATAGATTGCAGGGCCATATCCCTGACTCATTCTCAAACCTGTCATTCTTGGTGCAGATTGATCTATCAAACAATGAGTTAACAGGGGAGATTCCATCTAGAGGGCAATTGAGCACACTTCCAGCTTCTCAGTATGCAAACAATCCCGGTCTTTGTGGTGTTCCTTTGCAGGAATGCAGCAGGAATGATAACGCCCAAAGCACAGCAAATCAAAGTGAGGAGATTCCCAGAGGAGGCCATAGATCAGCAACTGCAGCATGGGCTAACAGCATTGTCATGGGGATTCTGATTTCTGTGGCTTCTGTTTGTATTTTGATCGTGTGGGCAATCGCGATGCGGGCGAGGAGGAAGGAGGCAGAGGAAGTGAAGATGCTTAATAGCTTGCAGGCATCACATGCTGCCACAACATGGAAGATTGACAAGGAGAAAGAGCCTCTAAGCATCAATGTTGCAACCTTTCAGAGGCAGCTTAGGAAGCTGAAATTCTCACAGCTGATCGAAGCAACCAATGGATTCTCAGCAGCAAGCCTAATTGGTTGTGGTGGTTTTGGTGAAGTGTTCAAGGCCACACTGAAGGACGGTTCAAGTGTTGCAATAAAGAAGCTCATTAGGCTGAGCTGCCAGGGTGATAGAGAATTCATGGCTGAGATGGAAACCTTGGGGAAGATCAAGCACAGAAACCTAGTCCCTCTGTTGGGATACTGCAAAGTTGGGGAAGAGAGGCTGCTTGTGTATGAGTACATGGAGTATGGAAGCCTGGAGGAGATGCTCCACGGCAGAACAAAGTCGCGCGACCGGCGAATTCTGACATGGGAAGAGAGGAAAAAGGTTGCAAGAGGTGCTGCCAAAGGACTTTGTTTCCTTCACCACAATTGCATCCCACACATAATACACAGAGACATGAAATCAAGCAATGTGCTGCTTGATCATGAAATGGAGTCAAGAGTGTCTGATTTCGGAATGGCAAGGCTCATAAGTGCACTTGACACACATCTCAGCGTCAGCACATTGGCCGGAACACCTGGCTATGTTCCACCCGAGTACTACCAAAGCTTCAGGTGCACGGCAAAGGGAGATGTCTACTCTTTTGGAGTTGTCATGCTTGAATTGTTAACCGGAAAGCGCCCCACCGATAAGGAGGACTTTGGAGACACCAATTTGGTCGGATGGGCCAAGATGAAGGTTCGCCAAGGGACTCACATGGAAGTCATTGATCCTGATTTGCTTCAGGTCTGTCAAGGTTCAGATGAAGCTCAGCTCAATGAAGTTAAGGACATGCTTCGCTTCTTGGATATCACTCTGCAGTGCGTTGATGACTTGCCTTCTAAGAGGCCAAACATGTTGCAGGTTGTTGCCATGCTCAGAGACCTTCATCATGGAACCACCAACACTGCTTGA 3426 0.4542 MENNNNKRNPLPHFPRLTLTTITLMIFLVTMMFPVTEEAAAPVSSSIKTDEQALLMFKKMVQKDETGALSGWQLNRNPCTWFGVSCTHGRVTQLDLSGHGLSGTITLDPLSSLDMLSVLKLSLNSFSVNSTSLLTLPYSLTQLDLSFAGVSGPIPDNFFSRCPNLVVVNLSYNNMTGPIPDNFLQNSDKLQSLDLSSNNLSGSISGLKIDCNSLLQLDLSENRLSDSIPISLSNCTSLKSLNLGNNLISGEIPKALGNLNSLQTLDLSRNQLIGWIPFEFGNVCASLVELRLSFNNLTGSIPSSFSSCTWLQLLDISNNNMSGPLPDSIFHNLGSLQELRLGNNAISGPFPSSISSCKKLRIVDFSSNKFYGSIPIDICPGAASLEELRMPDNLITGEIPSQLSKCSQLKTLDFSLNYLNGSIPEELGQLENLEQLIAWFNGLEGKIPPKLGKCKKLKDLILNNNHLTGEIPSELFNCSNLEWISLTSNELSGEIPREFGLLTRLAVLQLGNNSFTGQIPGELANCSSLVWLDLNSNKLTGEIPPRLGRQQGAKSLFGILSGNTLVFVRNVGNSCKGVGGLLEFYGIRPERLLQVPTLRTCDFTRLYSGPVLSLFTKYQTLEYLDLSYNELRGRIPQEFGDMEALQVLELSHNQLSGEIPSTLGQLKNLGVFDASHNRLQGHIPDSFSNLSFLVQIDLSNNELTGEIPSRGQLSTLPASQYANNPGLCGVPLQECSRNDNAQSTANQSEEIPRGGHRSATAAWANSIVMGILISVASVCILIVWAIAMRARRKEAEEVKMLNSLQASHAATTWKIDKEKEPLSINVATFQRQLRKLKFSQLIEATNGFSAASLIGCGGFGEVFKATLKDGSSVAIKKLIRLSCQGDREFMAEMETLGKIKHRNLVPLLGYCKVGEERLLVYEYMEYGSLEEMLHGRTKSRDRRILTWEERKKVARGAAKGLCFLHHNCIPHIIHRDMKSSNVLLDHEMESRVSDFGMARLISALDTHLSVSTLAGTPGYVPPEYYQSFRCTAKGDVYSFGVVMLELLTGKRPTDKEDFGDTNLVGWAKMKVRQGTHMEVIDPDLLQVCQGSDEAQLNEVKDMLRFLDITLQCVDDLPSKRPNMLQVVAMLRDLHHGTTNTA* 1142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g5432 1141 Pfam Leucine rich repeat 614 655 IPR001611 GO:0005515
Amo13g5432 1141 Pfam Leucine rich repeat 140 200 IPR001611 GO:0005515
Amo13g5432 1141 Pfam Leucine rich repeat 214 272 IPR001611 GO:0005515
Amo13g5432 1141 PANTHER LEUCINE-RICH RECEPTOR-LIKE KINASE FAMILY PROTEIN 37 1133 - -
Amo13g5432 1141 SMART LRR_typ_2 259 282 IPR003591 -
Amo13g5432 1141 SMART LRR_typ_2 527 550 IPR003591 -
Amo13g5432 1141 SMART LRR_typ_2 642 666 IPR003591 -
Amo13g5432 1141 SMART LRR_typ_2 502 526 IPR003591 -
Amo13g5432 1141 SMART LRR_typ_2 333 357 IPR003591 -
Amo13g5432 1141 SMART LRR_typ_2 454 478 IPR003591 -
Amo13g5432 1141 SMART LRR_typ_2 284 307 IPR003591 -
Amo13g5432 1141 ProSiteProfiles Protein kinase domain profile. 848 1138 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g5432 1141 Pfam BspA type Leucine rich repeat region (6 copies) 284 395 IPR026906 -
Amo13g5432 1141 Pfam Leucine rich repeat N-terminal domain 48 86 IPR013210 -
Amo13g5432 1141 ProSitePatterns Protein kinases ATP-binding region signature. 854 877 IPR017441 GO:0005524
Amo13g5432 1141 Pfam Protein tyrosine and serine/threonine kinase 852 1129 IPR001245 GO:0004672|GO:0006468
Amo13g5432 1141 Gene3D Transferase(Phosphotransferase) domain 1 924 1140 - -
Amo13g5432 1141 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 37 1133 - -
Amo13g5432 1141 SUPERFAMILY L domain-like 72 327 - -
Amo13g5432 1141 ProSitePatterns Serine/Threonine protein kinases active-site signature. 972 984 IPR008271 GO:0004672|GO:0006468
Amo13g5432 1141 SUPERFAMILY L domain-like 597 732 - -
Amo13g5432 1141 SMART serkin_6 848 1130 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g5432 1141 Pfam Brassinosteroid receptor island domain 557 615 IPR045381 -
Amo13g5432 1141 Gene3D Ribonuclease Inhibitor 49 161 IPR032675 -
Amo13g5432 1141 ProSiteProfiles Leucine-rich repeat profile. 189 211 IPR001611 GO:0005515
Amo13g5432 1141 SUPERFAMILY Protein kinase-like (PK-like) 829 1130 IPR011009 -
Amo13g5432 1141 Gene3D Phosphorylase Kinase; domain 1 807 923 - -
Amo13g5432 1141 Gene3D Ribonuclease Inhibitor 179 736 IPR032675 -
Amo13g5432 1141 Gene3D - 560 616 - -
Amo13g5432 1141 PRINTS Leucine-rich repeat signature 190 203 - -
Amo13g5432 1141 PRINTS Leucine-rich repeat signature 259 272 - -
Amo13g5432 1141 SUPERFAMILY RNI-like 251 552 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g5432 Amo-Chr13 155223791 155227546 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g5432 50 1137 Receptor kinase-like Gene Family AT1G55610 48.895 0.0 1006
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Amo13g5432 PK_Tyr_Ser-Thr 1.7e-43 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g5432 13 155223791 155227546 Amo13g5432 13 155223791 155227546 ECH