Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g5352 ATGGCGCCGAGCGTCCGAGACATCCAGCTAACTCCCGCCGGTAAAACCTCCCTCGCCGCCGCCGCCGACGACTCCGGTGACCTCGAAGATGTTCGCCTTCTCGATTCCTACGATAAGGACGACGTTGAAGCAGCAGCAACAACATCAACGAAGCGGATTCAGGTCAGAGTCACCGGCATGACCTGTGCCGCATGTTCCAACTCCGTCGAATCCGCTCTCATGTCCTTTGACGGCGTCGTTTCCGCTTCCGTCGCACTTCTCCAGAACCGCGCCGACGTCGTTTTCAATCCGAGCCTCGTCAAGGATGAAGACATTAAGAATGCGGTTGAAGATGCAGGTTTCGAAGCCGAGGTTTTGACGGAACCTCAACAAAGCGCGACTGGAACGAAGCCAAGTGGTGCTACTCTTGTAGGACAGTTCACCATCACGGGGATGACGTGTGCGGCGTGCGTGAACTCCGTGGAAGGGATCCTCAAGGACCTCGGTGGTGTGAAGAAGGCTGTGGTGGCTTTGGCTACTTCGTTAGGTGAGGTTGAGTATGATCCAAATGTGATTAGCAAGGATGAGATCGTCCGTGCGATTGAAGATGCTGGGTTCGAGGCTTCGTTTGTGCAGAGCAATGAGCAGGACAAGGTGGTGCTAGGTGTTGTTGGTGTGTACAGTTTGGGTGATGCTCAGGTTCTGGAAGGTATGCTGAGTGGGATGAAAGGTGTGAGGCAGTTCCGATTCAACATCGTGTCGAATGAGTTGGATGTTGTGTTTGATCCCGAAGTTATTAGGCCTCGATCACTTGTTGATGGGATCCAGCTTGGGAGTAAAGGGAAATTTAGGTTGAATGTTAGGAACCCTTATGCCAGAATGGCTTCTACAGATGGTGCCGAGAGCTCAGCTATGTTTCGGCTTTTCACTTCCAGCCTGTTTCTTAGTGTTCCTCTCTTCTTCATGGGGGTAGTTTGTCCTCACATACCATTCATATACTCCTTATTACTCAGGAGATGTGGACCTTTCCTCATGGGTGATTGGTTGAAATGGGCATTGGTGAGTGTCATCCAATTTGTGATTGGAAGGCGCTTCTACATTGCAGCGGGCAGGGCTCTTAGGAATGGTTCAACAAACATGGATGTCCTGGTTGCTTTAGGAACTACAGCCTCTTATGTTTATTCTGTTTGTGCTCTTCTGTATGGTGCTGTTACTGGATTTTGGTCTCCAACATACTTTGAAACAAGTGCTATGCTCATAACATTTGTATTGTTGGGCAAGTATTTGGAATGCCTTGCCAAGGGAAAGACATCTGATGCCATTAAGAAGTTAGTGGAACTTGCTCCTGCAACTGCTTTATTGATTGTAAAAGATAAAGGTGGTAAATTAATTGAGGAAAGGGAAATAGACTCCTTACTCATTGAACCTGGTGATACATTAAAAGTTCTTCCTGGTACAAAGATTCCCGCTGATGGTATTGTTAAGTGGGGATCAAGTTATGTAAATGAGAGCATGGTGACTGGTGAATCTGTACCTGTTTTGAAAGAGCTCAATGCATCAGTTATTGGAGGTACAATCAATTCACATGGTGTCCTGCACATTCAAGCAACTAAAGTAGGATCCGATACAGTTTTGAGTCAGATAATTAGTTTGGTGGAGACAGCCCAGATGTCCAAAGCTCCCATTCAGAAGTTTGCTGATTATGTAGCAAGCATATTTGTTCCTACTGTTGTGGCTTTGTCATTATTGACATTCCTGTGTTGGTATACTGCTGGGGCTCTTGAAGCTTACCCAAAAGAATGGCTACCAGAAAATGGAAATCATTTCGTTTTTGCTCTCATGTTTTCGATATCTGTTGTGGTGATTGCATGCCCCTGTGCCCTTGGTTTGGCAACACCAACTGCTGTCATGGTGGCAACAGGGGTTGGGGCTAACAATGGTGTGTTAATTAAAGGAGGAGATGCCTTGGAAAGGGCTCAGATGGTGAAGTATGTTATATTTGATAAGACAGGCACTCTAACTCAAGGGAAAGCCACTGTTACTACTGTCAAGGTGTTCACAGGAATGGAGCGAGGAGAATTTCTTACACTGGTGGCTTCTGCTGAGGCTAGCAGTGAACACCCATTGGGAAAAGCAATATTACAATATGCACGCCATTTTCATTTCTTTGATGAGTCCTCTACTACCAATGGTACTCTGAATGATGCGAAGGAATTAAGTTCTGGGTGGCTTCATGATGTATCAGATTTCTCTGCTCTCCCAGGAAGAGGTGTCCAGTGCTTTATAGATGGGAAGCGCATTTTGGTTGGTAACAGAAAGCTGCTGTCAGAAAATGGTATAGATATTTCCACTGAAGTGGAAAATTTTGTGGTAGAGCTTGAAGAAAGTGCAAAGACAGGAATACTGGTAGCATATGATGACGTTCTAACTGGAGTGTTGGGTGTTGCAGACCCACTAAAGAGAGAAGCTTCTGTTGTTATAGATGGCCTCCATAAAATGGGAGTCATACCTGTTATGGTTACAGGAGACAATTGGAGAACAGCTCGAGCTGTTGCAAAGGAGCTTGGAATTCAAGATGTGAGGGCAGAGGTTATGCCGGCAGGAAAGGCGGATGTTGTTCGATCCTTTCAAAAGGATGGGAGCGTAGTAGCAATGGTGGGTGATGGCATCAATGACTCTCCTGCATTAGCCGCTGCAGATGTTGGTATGGCAATTGGAGCTGGGACTGATATTGCAATAGAAGCCGCTGACTATGTGCTGATGAGATATAACTTGGAAGATGTGATCACAGCCATTGATCTTTCTAGGAAGACATTTTCTCGTATTCGATTGAACTATGTATTTGCCATGGCTTACAATGTTATTGCAATACCAGTTGCTGCGGGAGTGTTTTTCCCTTCTCTGGGGATCCAGCTGCCACCGTGGGTTGCTGGTGCATGCATGGCTCTCTCCTCTGTAAGTGTTGTATGCTCTTCTTTGCTTTTGAGAAGATATAGAAAACCCAGACTTACCGCAATACTTGAAATAGTTGTAGAATAA 3018 0.4599 MAPSVRDIQLTPAGKTSLAAAADDSGDLEDVRLLDSYDKDDVEAAATTSTKRIQVRVTGMTCAACSNSVESALMSFDGVVSASVALLQNRADVVFNPSLVKDEDIKNAVEDAGFEAEVLTEPQQSATGTKPSGATLVGQFTITGMTCAACVNSVEGILKDLGGVKKAVVALATSLGEVEYDPNVISKDEIVRAIEDAGFEASFVQSNEQDKVVLGVVGVYSLGDAQVLEGMLSGMKGVRQFRFNIVSNELDVVFDPEVIRPRSLVDGIQLGSKGKFRLNVRNPYARMASTDGAESSAMFRLFTSSLFLSVPLFFMGVVCPHIPFIYSLLLRRCGPFLMGDWLKWALVSVIQFVIGRRFYIAAGRALRNGSTNMDVLVALGTTASYVYSVCALLYGAVTGFWSPTYFETSAMLITFVLLGKYLECLAKGKTSDAIKKLVELAPATALLIVKDKGGKLIEEREIDSLLIEPGDTLKVLPGTKIPADGIVKWGSSYVNESMVTGESVPVLKELNASVIGGTINSHGVLHIQATKVGSDTVLSQIISLVETAQMSKAPIQKFADYVASIFVPTVVALSLLTFLCWYTAGALEAYPKEWLPENGNHFVFALMFSISVVVIACPCALGLATPTAVMVATGVGANNGVLIKGGDALERAQMVKYVIFDKTGTLTQGKATVTTVKVFTGMERGEFLTLVASAEASSEHPLGKAILQYARHFHFFDESSTTNGTLNDAKELSSGWLHDVSDFSALPGRGVQCFIDGKRILVGNRKLLSENGIDISTEVENFVVELEESAKTGILVAYDDVLTGVLGVADPLKREASVVIDGLHKMGVIPVMVTGDNWRTARAVAKELGIQDVRAEVMPAGKADVVRSFQKDGSVVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAADYVLMRYNLEDVITAIDLSRKTFSRIRLNYVFAMAYNVIAIPVAAGVFFPSLGIQLPPWVAGACMALSSVSVVCSSLLLRRYRKPRLTAILEIVVE* 1006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g5352 1005 CDD HMA 54 117 IPR006121 GO:0046872
Amo13g5352 1005 Pfam Heavy-metal-associated domain 55 115 IPR006121 GO:0046872
Amo13g5352 1005 Pfam Heavy-metal-associated domain 140 200 IPR006121 GO:0046872
Amo13g5352 1005 ProSiteProfiles Heavy-metal-associated domain profile. 52 118 IPR006121 GO:0046872
Amo13g5352 1005 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 751 964 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Amo13g5352 1005 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 412 681 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Amo13g5352 1005 Gene3D - 666 759 IPR023299 GO:0000166
Amo13g5352 1005 Gene3D - 760 810 IPR023299 GO:0000166
Amo13g5352 1005 SFLD p-type atpase 641 931 IPR044492 -
Amo13g5352 1005 PRINTS P-type cation-transporting ATPase superfamily signature 879 898 - -
Amo13g5352 1005 PRINTS P-type cation-transporting ATPase superfamily signature 902 914 - -
Amo13g5352 1005 PRINTS P-type cation-transporting ATPase superfamily signature 495 509 - -
Amo13g5352 1005 PRINTS P-type cation-transporting ATPase superfamily signature 659 673 - -
Amo13g5352 1005 PRINTS P-type cation-transporting ATPase superfamily signature 804 815 - -
Amo13g5352 1005 PRINTS P-type cation-transporting ATPase superfamily signature 826 836 - -
Amo13g5352 1005 Gene3D - 138 203 - -
Amo13g5352 1005 PRINTS H+-transporting ATPase (proton pump) signature 879 895 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Amo13g5352 1005 PRINTS H+-transporting ATPase (proton pump) signature 851 867 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Amo13g5352 1005 PRINTS H+-transporting ATPase (proton pump) signature 910 935 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Amo13g5352 1005 SUPERFAMILY Calcium ATPase, transduction domain A 459 545 IPR008250 -
Amo13g5352 1005 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 373 988 IPR027256 GO:0006812|GO:0016021|GO:0019829
Amo13g5352 1005 ProSiteProfiles Heavy-metal-associated domain profile. 137 203 IPR006121 GO:0046872
Amo13g5352 1005 Gene3D - 626 936 IPR023214 -
Amo13g5352 1005 CDD P-type_ATPase_Cu-like 300 975 - -
Amo13g5352 1005 Pfam haloacid dehalogenase-like hydrolase 655 893 - -
Amo13g5352 1005 PANTHER HEAVY METAL P-TYPE ATPASE 16 998 - -
Amo13g5352 1005 CDD HMA 139 202 IPR006121 GO:0046872
Amo13g5352 1005 SUPERFAMILY HAD-like 658 985 IPR036412 -
Amo13g5352 1005 ProSitePatterns Heavy-metal-associated domain. 57 87 IPR017969 GO:0046872
Amo13g5352 1005 Gene3D - 427 549 - -
Amo13g5352 1005 ProSiteProfiles Heavy-metal-associated domain profile. 211 269 IPR006121 GO:0046872
Amo13g5352 1005 SUPERFAMILY HMA, heavy metal-associated domain 48 121 IPR036163 GO:0046872
Amo13g5352 1005 SUPERFAMILY HMA, heavy metal-associated domain 207 268 IPR036163 GO:0046872
Amo13g5352 1005 TIGRFAM TIGR00003: copper ion binding protein 139 201 IPR006122 GO:0005507
Amo13g5352 1005 TIGRFAM TIGR00003: copper ion binding protein 53 116 IPR006122 GO:0005507
Amo13g5352 1005 PANTHER ATP7, ISOFORM B 16 998 - -
Amo13g5352 1005 Pfam E1-E2 ATPase 440 638 - -
Amo13g5352 1005 Gene3D - 50 121 - -
Amo13g5352 1005 SUPERFAMILY HMA, heavy metal-associated domain 138 208 IPR036163 GO:0046872
Amo13g5352 1005 ProSitePatterns Heavy-metal-associated domain. 142 171 IPR017969 GO:0046872
Amo13g5352 1005 SFLD C1.7: P-type atpase like 641 931 - -
Amo13g5352 1005 Coils Coil 1003 1005 - -
Amo13g5352 1005 ProSitePatterns E1-E2 ATPases phosphorylation site. 661 667 IPR018303 -
Amo13g5352 1005 SUPERFAMILY Calcium ATPase, transmembrane domain M 396 966 IPR023298 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g5352 Amo-Chr13 153727433 153733446 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g5352 13 153727433 153733446 Amo13g5352 13 153727433 153733446 ECH