Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g4905 ATGATGGAGGAGAGGAAGAAGTTTGTGTGCAAGTATTGCAGCAAGAGGTTTCCATGTGGCAAGTCTCTTGGTGGTCACATCAGGACCCACATCACTGAAGAAAGAACCACCATCAATGCTTCTTCTTCTCCCATTGCTGCTAACACTCATGATCTTCTTCTCAAGAAGAGGAAGAGGGATTCATCATGGCCTACTCAATCTGCTGCTGTTGGTGGTGGTGCTGCTGCTGGTAACAATAATAATAGCCCCATTTATGGGCTAAGGGAGAATCCCAAGAAGACAACAAGGTTTGTGCATATTGATGGTGCTGCTGCCACCAACTTGGCACGTGAGAAGGAAGAAAGGTTCTGCAAGGAATGTGGGAAAGGCTTTCCATCAATGAAAGCTCTGTGTGGCCACATGGCTTGTCACTCTGACAAAGACAAAGACAGAGAGAAATTGGTGGTTATGGCTATGGATGATGATGGTGATGATGATGAATATGGTGATAATAATAGCCAATCTGATGCTGAGAGTTCTGGTGGTGCTGCTGCTTCGTTGCTTCCAAGGAGGAGATCCAAGAGGATGATGAGGTTCAAGAATCTCAGACCCTTTTGTTCTTCTTCTCCATCTGCTTCTGTCTCTGAAGTGGAGCAGCAGCAGGAGGAGCAAGAAGAGGTTGCTAGGATGCTCATGATGCTCTCAAGAGATTCCGGCCGGAGGGGTCGATTCGTGTCTCTTACTGAGTCTTCTGATAACAATTCTGTTGTTCTTAACACCAATAAGGTTGCTGCTGTGACTGTGAGTAATAACAATGGCAGGAAGAACTTTGTGCCTAATGATTCAGATTCAGCTGCTGGGTCTCTGAGGAGTGGCCTCAAGAACAAAATGGTTGATTCAGATGTCTCAATGGATGAATTCAAAGGGTGGAAGAATGTTAAAGATAAAGACAAAGAGAGAAGAAGCAAATACAGTAGTACTGTTGCTTTTGCTGCTGCAGTTAAGGATTTGGAATATGAAACAACAATATCTACTACTGCTACTACAAGGAAGAAGTTTGATTTCAGAAAGAGAGCAAATTATGATTCTCTTATTCACAGTTCAACTGAGGTTCCTACCAAGAATGAAAAAACTGGTTTCGCCAATGATGAATATGATGATTGTTCTTATGATTCAACAGAATATGATGATGTTGATGAAGATGAAGAGAGTGATGAGAACAGCACTGATACTGATACTGATTCATTTCCTGCTCCAAAGGCTCATAGCACTAAGGCCAGTACAAAGGCTAATAAGAAAAAGAAGAACATGAAGAAGAAGAAGTTGAAGTCAAAGAAAAGCAAGGAACATGAATGTCCAATTTGCTACAAGATTTTCAAGTCAGGACAAGCGTTAGGAGGACACAAAAGATCCCATTTCATTGGAGGTTCATCAGAGGAGAACACTTTGGTCATCAAGCAGCATCATGCTGCTCCTTCTTCTCTTGTTGTTGTTCCTAATTGCCTAATTGATCTCAATCTTCCTGCTCCTGTTGATGACTAA 1521 0.4234 MMEERKKFVCKYCSKRFPCGKSLGGHIRTHITEERTTINASSSPIAANTHDLLLKKRKRDSSWPTQSAAVGGGAAAGNNNNSPIYGLRENPKKTTRFVHIDGAAATNLAREKEERFCKECGKGFPSMKALCGHMACHSDKDKDREKLVVMAMDDDGDDDEYGDNNSQSDAESSGGAAASLLPRRRSKRMMRFKNLRPFCSSSPSASVSEVEQQQEEQEEVARMLMMLSRDSGRRGRFVSLTESSDNNSVVLNTNKVAAVTVSNNNGRKNFVPNDSDSAAGSLRSGLKNKMVDSDVSMDEFKGWKNVKDKDKERRSKYSSTVAFAAAVKDLEYETTISTTATTRKKFDFRKRANYDSLIHSSTEVPTKNEKTGFANDEYDDCSYDSTEYDDVDEDEESDENSTDTDTDSFPAPKAHSTKASTKANKKKKNMKKKKLKSKKSKEHECPICYKIFKSGQALGGHKRSHFIGGSSEENTLVIKQHHAAPSSLVVVPNCLIDLNLPAPVDD* 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g4905 506 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 2 506 - -
Amo13g4905 506 Pfam C2H2-type zinc finger 443 465 - -
Amo13g4905 506 Pfam C2H2-type zinc finger 8 30 - -
Amo13g4905 506 Pfam C2H2-type zinc finger 117 139 - -
Amo13g4905 506 ProSiteProfiles Zinc finger C2H2 type domain profile. 115 142 IPR013087 -
Amo13g4905 506 MobiDBLite consensus disorder prediction 63 84 - -
Amo13g4905 506 MobiDBLite consensus disorder prediction 380 403 - -
Amo13g4905 506 ProSitePatterns Zinc finger C2H2 type domain signature. 445 465 IPR013087 -
Amo13g4905 506 MobiDBLite consensus disorder prediction 366 439 - -
Amo13g4905 506 SUPERFAMILY beta-beta-alpha zinc fingers 6 137 IPR036236 -
Amo13g4905 506 SMART c2h2final6 8 30 IPR013087 -
Amo13g4905 506 SMART c2h2final6 443 465 IPR013087 -
Amo13g4905 506 SMART c2h2final6 115 137 IPR013087 -
Amo13g4905 506 Gene3D Classic Zinc Finger 1 65 - -
Amo13g4905 506 MobiDBLite consensus disorder prediction 58 84 - -
Amo13g4905 506 ProSiteProfiles Zinc finger C2H2 type domain profile. 443 465 IPR013087 -
Amo13g4905 506 MobiDBLite consensus disorder prediction 419 439 - -
Amo13g4905 506 ProSitePatterns Zinc finger C2H2 type domain signature. 117 137 IPR013087 -
Amo13g4905 506 MobiDBLite consensus disorder prediction 154 185 - -
Amo13g4905 506 ProSitePatterns Zinc finger C2H2 type domain signature. 10 30 IPR013087 -
Amo13g4905 506 ProSiteProfiles Zinc finger C2H2 type domain profile. 8 35 IPR013087 -
Amo13g4905 506 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 2 506 - -
Amo13g4905 506 MobiDBLite consensus disorder prediction 404 418 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g4905 Amo-Chr13 148006621 148008307 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Amo13g4905 zf-C2H2_6 1.3e-09 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g4905 13 148006621 148008307 Amo13g4905 13 148006621 148008307 ECH