Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g4866 ATGTCGGAAGTTAAGGACCCGGCGATAAAGCTTTTTGGGAGGACGATTCAGCTGCCACTGATCCCCAATGACCCTTCTCCACCACCACCACCACCTCCTCCTCCTCCATCTTCTTCTTCTCCACCAACTGAAGTTGAAGTGAGTTCTGTATCACAACCAGAAACAGAGGAACCATCAAAGAGAGAACTAACCTCAACACAAGATAAAGAAACCACAGAGGATTTGAAATCTCCCACAACAACATCTTCAGGCATATTTGAGAACCCAAAGACTCCCACAAATGGTGGAGAACAGAGTGAGACCAGTGTTTCTCAAGAAAAAACTCCCAAGAAACCGGACAAGATACTTCCGTGTCCGCGATGCAACAGCATGGACACCAAATTCTGCTACTACAACAATTACAACGTCAATCAGCCGCGTCATTTCTGCAAGAACTGTCAGAGATACTGGACTGCCGGAGGAACAATGAGGAACGTGCCAGTAGGCGCTGGTCGCCGAAAGAACAAAAACTCTGCTGCATCGCATTATCGCCAGATAATGGTCCCGGAGGCGCTTCAAGCAGCTCACCTCAATGCCCCCAATGGACTACACAATGCTGTCTTGACCTTTGGCCCAGATTCTCCTCTTTGTGATTCCATGTCCTCTGTATTGAACATTGCAGAAAAAGCCACAAATGGTGTTGTAAACGGGTTTCATGCACCGGAGGCAGCAACTACTTTTGTTTCCTATGGTAGGGATGATGATGGGAATGATCACTCAGTAGGAGTTTCTGGTACAACTTCAACTTCATCAGAGAGGAGAGGCCATGCCAGCTCTCATGAATCGGCGGATAAAAGAGTCGAAAGTTTCCCTCCTCAACTAACTTACTTCCCAAGTAATTCTCCATGGCCGTATCCATGGAATTCGCCAATGCCTCCTCCTCCCACATTTTGCCCTCCAGGCTATCCTATGTCGATATACACCACCCCTTCATACTGGGCATGGAATATGCCATGCATCTCACCCCAATCTCCGGCCCCTGGTTCCGGCCCAAATTCGCCGTTGGGGAAACACTCAAGGGATGGTAACATCATAACCCCGGCCAATTCGCAAAAGGAAAAGCCTAACACAGAAAGCAATAATGTGTTGATCCCCAAGACACTTAGAATTGATGATCCTAGTGAAGCTGCAAAGAGTTCAATATGGTCAACACTAGGAATCAAGAATGAGAAGGCCAACTCTCTCAATGGAGGAGGCCTCTTCAAGGCGTTCCCTTCCAAGGGTAACGACAAGAGTCACGTGGTCGAGGCATCGCCGATGCTGCACGCCAACCCTGCCGCCCTGACGCGGTCTCTCACCTTCCACGAGCGGACCTAG 1356 0.4897 MSEVKDPAIKLFGRTIQLPLIPNDPSPPPPPPPPPPSSSSPPTEVEVSSVSQPETEEPSKRELTSTQDKETTEDLKSPTTTSSGIFENPKTPTNGGEQSETSVSQEKTPKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNSAASHYRQIMVPEALQAAHLNAPNGLHNAVLTFGPDSPLCDSMSSVLNIAEKATNGVVNGFHAPEAATTFVSYGRDDDGNDHSVGVSGTTSTSSERRGHASSHESADKRVESFPPQLTYFPSNSPWPYPWNSPMPPPPTFCPPGYPMSIYTTPSYWAWNMPCISPQSPAPGSGPNSPLGKHSRDGNIITPANSQKEKPNTESNNVLIPKTLRIDDPSEAAKSSIWSTLGIKNEKANSLNGGGLFKAFPSKGNDKSHVVEASPMLHANPAALTRSLTFHERT* 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g4866 451 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN 1 451 - -
Amo13g4866 451 MobiDBLite consensus disorder prediction 55 75 - -
Amo13g4866 451 PANTHER CYCLIC DOF FACTOR 2 1 451 IPR045174 GO:0003700|GO:0006355
Amo13g4866 451 MobiDBLite consensus disorder prediction 356 371 - -
Amo13g4866 451 MobiDBLite consensus disorder prediction 242 282 - -
Amo13g4866 451 MobiDBLite consensus disorder prediction 21 41 - -
Amo13g4866 451 MobiDBLite consensus disorder prediction 76 103 - -
Amo13g4866 451 MobiDBLite consensus disorder prediction 1 117 - -
Amo13g4866 451 ProSiteProfiles Zinc finger Dof-type profile. 116 170 IPR003851 GO:0003677|GO:0006355
Amo13g4866 451 Pfam Dof domain, zinc finger 113 170 IPR003851 GO:0003677|GO:0006355
Amo13g4866 451 MobiDBLite consensus disorder prediction 337 371 - -
Amo13g4866 451 ProSitePatterns Zinc finger Dof-type signature. 118 154 IPR003851 GO:0003677|GO:0006355
Amo13g4866 451 SUPERFAMILY Formin homology 2 domain (FH2 domain) 27 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g4866 Amo-Chr13 147443273 147446923 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g4866 1 450 C2C2-Dof Transcription Factor Family AT3G47500 43.827 3.03e-91 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Amo13g4866 zf-Dof 2.7e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g4866 - - gmx:100813315 533.872
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g4866 13 147443273 147446923 Amo13g4866 13 147443273 147446923 ECH
Amo13g4866 13 147443273 147446923 Amo13g5635 13 158217141 158219676 ECH