Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g4580 ATGATGCCACCTGGTGATACACCTTCGAAGGCTACTGCAACAACAAAAACATGCTCATCACCTAATACAAAAGATCATGAGAATTCCGACCAGCAAGGTGGAGGTGGTGGCCGGAAAACCACAAAGGCGGCAGCAGCAGAACAAGGACTAAAGTGCCCTCGATGTGACTCACCCAACACCAAATTCTGCTACTATAACAATTACAGCCTTACGCAGCCACGCCACTTCTGCAAGACTTGCCGCCGCTACTGGACAAAAGGCGGAGCCCTGCGCAACGTCCCCATAGGCGGTGGATGCCGCAAAAGCAAGAAAGGGAAGCCCTCGTCGTCGTCCTCCATCTCTTACTCAAGGGCATTTTCATGCGACTCCTCCAGGGACTCTGGTTCTTCCTCTGACCTCGCTGGCCTTAGGTACCTCCATGGGCTTTCTTCTCCTCCCATGGATTTTCAACTTGGAGGGTTAACTTTCCCTGTCCCTTCTAGGCTGCAACATCATCATCAACCTCCAATGGCTACTACAGCTGCTTTCTATAACAACCAGTTCTCTTCTTTTGGGGATGTTGTTCCGGGAGCTACTACTACTGCTTCTGCTTCTGCTTCTTCCGCCATTGATTATCCCTCGGGGAGTTCTTTGATTGGTCTGAACTATCCGTTTTGTTCTTCAGATGGAAGCGGTAGTAATGGTGCAATAATCCATGGCGGTATGAACAATAACTTTGAGGGTAGTAGTAGCCTTGCGTCTTCGATTGAGTCGTTGAGTTCCTTGAACCAAGACTTGCATTGGAAGCTTCAGCAGCAAAGGTTGGCAATGCTCTTTGTCGGAGACAACCACCACAAAGAAGATCACAACAACAACAGCAACCGCAACGGCAACGTTTCTTTTTCTCCCGTGGTTGTTGATCTTGATCATCATCATCATCATCATCAGCAGCAGCAGCAGCAGCAGAGACCCCAACCAATTTTATTTGAGAATCTTGAAATTTCAAAGGCAGGTGCAGGTGCTACTACTGTAGATGCAGATACTAGAGCCACAGAATGGTTCTTCGGGAATTCTCATGCTCCTACTCCAACGACTACTACCAGCAGCGGTTGCAATGGCCATGAAGATAGCTGGATGATGGGCAGCAGCGGTGTCCATGGTTGGCCTGATTTGCAACCGCACCCGCAGCAACAGTACAGTTCTTTGCCCTAG 1191 0.492 MMPPGDTPSKATATTKTCSSPNTKDHENSDQQGGGGGRKTTKAAAAEQGLKCPRCDSPNTKFCYYNNYSLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKSKKGKPSSSSSISYSRAFSCDSSRDSGSSSDLAGLRYLHGLSSPPMDFQLGGLTFPVPSRLQHHHQPPMATTAAFYNNQFSSFGDVVPGATTTASASASSAIDYPSGSSLIGLNYPFCSSDGSGSNGAIIHGGMNNNFEGSSSLASSIESLSSLNQDLHWKLQQQRLAMLFVGDNHHKEDHNNNSNRNGNVSFSPVVVDLDHHHHHHQQQQQQQRPQPILFENLEISKAGAGATTVDADTRATEWFFGNSHAPTPTTTTSSGCNGHEDSWMMGSSGVHGWPDLQPHPQQQYSSLP* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g4580 396 MobiDBLite consensus disorder prediction 373 396 - -
Amo13g4580 396 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN-RELATED 27 371 - -
Amo13g4580 396 MobiDBLite consensus disorder prediction 348 367 - -
Amo13g4580 396 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 27 371 IPR045174 GO:0003700|GO:0006355
Amo13g4580 396 Pfam Dof domain, zinc finger 48 104 IPR003851 GO:0003677|GO:0006355
Amo13g4580 396 MobiDBLite consensus disorder prediction 1 42 - -
Amo13g4580 396 MobiDBLite consensus disorder prediction 8 36 - -
Amo13g4580 396 ProSiteProfiles Zinc finger Dof-type profile. 50 104 IPR003851 GO:0003677|GO:0006355
Amo13g4580 396 MobiDBLite consensus disorder prediction 104 127 - -
Amo13g4580 396 ProSitePatterns Zinc finger Dof-type signature. 52 88 IPR003851 GO:0003677|GO:0006355
Amo13g4580 396 MobiDBLite consensus disorder prediction 95 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g4580 Amo-Chr13 142930730 142932475 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g4580 40 396 C2C2-Dof Transcription Factor Family AT5G65590 38.504 7.22e-63 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Amo13g4580 zf-Dof 2.3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g4580 - - ahf:112791714 669.077