Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g4472 ATGAAGAGGGATCACAGTGAAGCTGGCTCCAGCTACGGCCAGCAAGGTAGCAGCAGCAGCAGCGTGGCCAAAGGCGAATGCTCGTCAATGTCGAGCGGGAAGGCCAAGATGTGGGAGGAAGACCACGACCCAAGCTCCGGCGGCGGCGGCGGCGGCATGGACGAGCTCCTCGCTGCTCTTGGTTACAAGGTTCGCAACTCAGACATGGCTGACGTGGCCCAGAAGCTGGAGCAGCTGGAGATGGTTATGGGTACCGCGCAGGAAGACGGAATTTCACACCTGGCTACTGACACCGTTCACTACGACCCTACGGATCTATACTCCTGGGTGCAGAGCATGATCAATGAGCTCAACCCTCCCCCAAGCACCGCTGCCGCAAACGGAACAAGCAGCTCACTGCTGTGCAGCTCCCAAATCGAGGAGAACACCTCACGCGCCTTCACGGACGACTCTGAGTACGACCTGAGAGCGATACCTGGCATCGCCGTTTACCCTCAAAACGACGAACCCAGCAACAAACGGCTGAAAACGAATCCTGTTCCAGAAATTGGGTCAGAGGGTGTTCAAGAACCGAGCCGGCCAGTTGTGCTTGTGGATTCCCAAGAAACAGGTGTCCGTCTAGTCCACACCCTCTTAGCCTGCGCGGAGGCAGTCCAGCAAGAAAACCTAAAGCTGGCAGACGCGCTAGTGAAGCACGTGGGGCTACTCGCGCAGTCGCAGGCCGGTGCCATGAAGAAAGTTGCATCTTACTTTGCACAGGCACTTGCGAGGAGGATTTACCAGATTTACCCTCAAGAAGCCATGGACTCTTCTTTCTCAGATGTGCTCCACATGCACTTCTACGAGTCCTGCCCTTACCTCAAATTCGCCCACTTCACAGCCAACCAGGCCATACTCGAGGCCTTCGCTTCTGCCACCAGGGTCCACGTCATCGATTTCGGCCTCAAGCAAGGGATGCAGTGGCCCGCACTCCTGCAAGCCCTCACATTGCGCCCCGGCGGCCCACCCACTTTCCGTTTGACTGGAATAGGCCCGCCGCAGACCGACAACACCGACTCCCTGCAGCAAGTCGGATGGAAGCTTGCACAACTGGCACAAACCATAGGCGTTCAGTTCGAGTTTCGCGGCTTCGTCTGCTCTAGCCTCTCGGATCTTGACCCCGAAATGCTTGAGATCCGACCCGGAGAAGCCGTTGCGGTTAACTCCGTTTTCGAGTTGCATCGCATGCTGGCCCGCCCCGGCTCCATCGAGAAAGTTCTTGGCACGGTTAAGAAGATCAAGCCGAAGATCTTCACGGTGGTGGAGCAGGAAGCCAACCACAACGGTCCAGTTTTTGTGGATCGGTTCACGGAGGCGTTGCATTATTACTCGAGTTTGTTTGACTCGCTGGAGGGATCGGTGGCGACGGGGTTGGCGGCGCCGCCGCCGACTGAGGACCTATTGATGTCGGAGCTGTACCTCGGGAGGCAAATTTGCAACGTGGTGGCGTGCGAGGGCACAGACCGGGTGGAGCGGCACGAGACGCTGACGCAGTGGCGGGCCAGGATGGGGTCGGCCGGGTTCGAGGCGGTCCACTTGGGGTCGAACGCGTTCAAGCAAGCGAGCATGTTGCTGGCGCTGTTTGCGGGTGGGGATGGGTACAGGGTGGAGGAGAACAATGGGTGCCTCATGCTTGGGTGGCACACCAGGTCCCTGATTGCGACCTCGGCGTGGAAGCTTCCACCCCTTTCTTCTGGCGGCGAGTCTTAG 1749 0.5855 MKRDHSEAGSSYGQQGSSSSSVAKGECSSMSSGKAKMWEEDHDPSSGGGGGGMDELLAALGYKVRNSDMADVAQKLEQLEMVMGTAQEDGISHLATDTVHYDPTDLYSWVQSMINELNPPPSTAAANGTSSSLLCSSQIEENTSRAFTDDSEYDLRAIPGIAVYPQNDEPSNKRLKTNPVPEIGSEGVQEPSRPVVLVDSQETGVRLVHTLLACAEAVQQENLKLADALVKHVGLLAQSQAGAMKKVASYFAQALARRIYQIYPQEAMDSSFSDVLHMHFYESCPYLKFAHFTANQAILEAFASATRVHVIDFGLKQGMQWPALLQALTLRPGGPPTFRLTGIGPPQTDNTDSLQQVGWKLAQLAQTIGVQFEFRGFVCSSLSDLDPEMLEIRPGEAVAVNSVFELHRMLARPGSIEKVLGTVKKIKPKIFTVVEQEANHNGPVFVDRFTEALHYYSSLFDSLEGSVATGLAAPPPTEDLLMSELYLGRQICNVVACEGTDRVERHETLTQWRARMGSAGFEAVHLGSNAFKQASMLLALFAGGDGYRVEENNGCLMLGWHTRSLIATSAWKLPPLSSGGES* 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g4472 582 Coils Coil 69 89 - -
Amo13g4472 582 MobiDBLite consensus disorder prediction 166 188 - -
Amo13g4472 582 MobiDBLite consensus disorder prediction 1 52 - -
Amo13g4472 582 Pfam GRAS domain family 207 572 IPR005202 -
Amo13g4472 582 Gene3D - 52 117 IPR038088 -
Amo13g4472 582 PANTHER DELLA PROTEIN GAI1-RELATED 27 573 IPR030006 GO:0003712|GO:0005634
Amo13g4472 582 ProSiteProfiles GRAS family profile. 198 572 IPR005202 -
Amo13g4472 582 Pfam Transcriptional regulator DELLA protein N terminal 54 121 IPR021914 -
Amo13g4472 582 SMART DELLA_2 54 127 - -
Amo13g4472 582 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 27 573 IPR005202 -
Amo13g4472 582 MobiDBLite consensus disorder prediction 8 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g4472 Amo-Chr13 140940227 140942847 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g4472 1 573 GRAS Transcription Factor Family AT2G01570 61.285 0.0 706
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Amo13g4472 GRAS 9.4e-140 CL0063
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g4472 13 140940227 140942847 Amo13g4472 13 140940227 140942847 ECH