Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g4317 ATGGGTTTGAGTTCCAAGCAGGTTTCAAGGAGTAGTAGTGGACTTGATTGGAACCAAGCCTTATTGGAATCACAGAAATTGGAGCTTCCAATTCCAAAGCCTCATCATATCATGAAGAAACAACAACAGAATCAATCATCATCATCATCATCAGAGCCAATGAAGTGTCCAAGATGTGAATCTACCAACACAAAGTTCTGTTACTACAACAATTACAACAAGTCTCAGCCTCGCTATTTATGTAGAACTTGCAAGKGGCACTGGACCAAAGGTGGAACTTTGCGCAATGTTCCAGTTGGTGGTGGAAGAAAGAACAAAAGGGTAAAAAAYTCAACRGCCACTGCAACCGCCACAGCCACCGCCACCACCTCTACTTGCACCACAAGCATCAGAATTCAAGCTCCTTCTCTTGCAATGGATGATCACAAAAACATAGCTTCTCCTTCTCCTTCTTCTTCTTCTTCCCTCTATCAAGGTCTGATTCGTCCACCACCTTTCCTACTACATCAGAATCTGATGAATAATATCATTACCAGAGGCATAACATCAGAAAGTAAAGGTTATGGTATTGGTATTGGTATTGGTAATAATAACAATAATACCAATGGCATCTTTCTTGGTTCATCAGCTTTGTCTCTTCCTCAGAATCAAGGCTTGCTTTTCCCCTTCTCAACTGCATCAAGCTCTAATTTTGACACAAACCCATGTTTAGTTTCAGTTTCAACCTCTTTGCAATCCGCCAATGTTTATAATAACTGTGGTGGTGAAGAGTTTAAAGCAATAGAGGAACCAAGCATGAACAGCATAATGGCTACCACTACTTCTACACAACCATGGGAGATACCAGCAGCAACAATGGAAATGTCAAACTATTGGGGTTGGGAGGACATTGATTCTTTGGTCTCTACTGATCCGAACAATAATCATCCTTGGGATGATTCTGATGATATCAAACCCTGA 960 0.4094 MGLSSKQVSRSSSGLDWNQALLESQKLELPIPKPHHIMKKQQQNQSSSSSSEPMKCPRCESTNTKFCYYNNYNKSQPRYLCRTCKXHWTKGGTLRNVPVGGGRKNKRVKNSTATATATATATTSTCTTSIRIQAPSLAMDDHKNIASPSPSSSSSLYQGLIRPPPFLLHQNLMNNIITRGITSESKGYGIGIGIGNNNNNTNGIFLGSSALSLPQNQGLLFPFSTASSSNFDTNPCLVSVSTSLQSANVYNNCGGEEFKAIEEPSMNSIMATTTSTQPWEIPAATMEMSNYWGWEDIDSLVSTDPNNNHPWDDSDDIKP* 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g4317 319 MobiDBLite consensus disorder prediction 23 55 - -
Amo13g4317 319 Pfam Dof domain, zinc finger 53 106 IPR003851 GO:0003677|GO:0006355
Amo13g4317 319 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 40 196 IPR045174 GO:0003700|GO:0006355
Amo13g4317 319 ProSiteProfiles Zinc finger Dof-type profile. 54 108 IPR003851 GO:0003677|GO:0006355
Amo13g4317 319 MobiDBLite consensus disorder prediction 38 55 - -
Amo13g4317 319 PANTHER OS06G0284500 PROTEIN 40 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g4317 Amo-Chr13 138712617 138714873 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g4317 54 118 C2C2-Dof Transcription Factor Family AT5G60200 66.667 2.03e-27 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Amo13g4317 zf-Dof 4.6e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g4317 - - gmx:100791855 297.36