Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g4237 ATGTTGGTTAATATCATGCCTCCATCAACGACTAACGAATGGACACAGACTCAAATCATAGATGATCAAAATCACAACACCAAAGCTGAAGCTCCACCACCATCATCGTCATCATCAGCTGCTAGGGTTATGGAAAAACAAGGTCAAGAACATGTTCAGCAGCAGCAGCAGCAACAAGCTCTCAAGTGCCCTCGCTGCGATTCATCCAACACCAAATTCTGCTACTACAACAACTACAGCTTATCGCAGCCTAGACACTTCTGCAAAGCCTGCAAGCGATACTGGACAAGAGGTGGAACCCTCCGCAACGTCCCCGTCGGCGGTGGCTGCAGAAAAAACACCAAGCGTCTCAAGCGCCAATCATCTTCTTCCATCGATGCCACTCCTTCTCCTTCTTCTTCTTCCACTCATCCTCCGGCTTCTAATATCAACCCTTTGTTTTATGGGGTACCTAGTAGTAATAATAATAACAACAACAATAACTCTTGTGATTTGTTGAACCTACCTTCTTTCCCTGGGTTCAGAGTGAGTTCTGGGTATGATAATGATGTTCAGCCTCACCTAAGTGGGTTAGGTTTTTCATCAGGGATCATGTCCAATATGGAAGCTACTGGATTTGGTTCAAATGAGAGTAACTCATTTCTTTCGGCCTACAATTCCATCTTCGGTTCGTGTTCTTCATCAGCTTCTACTACCTTGCTGAGTTCCACTCTACTGCAGCATAAATTCATGAATGGTGGTGGATTCCAAGGGCTAGCTACTCCTGAGGTTGAAGAGATGCAAATGAGAGAGAGGCGTGAGGGAGAAAGAGGAGGAGTCATGGGTTGTTCTTCTTTGAAAGAAGTGAAAGGTGAATTATTGGGAGAAGAAAGAGGGAGAGAGAGGTTGGAGTGGCAGAATCAGATGATGGAACATACCATGGGCTTTTCTGATCCCTCTTCTTCGCTTTATTGGAGCACATCATCATCACCCATGGCTGCTTCTTCTTGGAATGATCAACCCAATATTGGTCCTTCTGTCACTTCACTCATCTAG 1035 0.4512 MLVNIMPPSTTNEWTQTQIIDDQNHNTKAEAPPPSSSSSAARVMEKQGQEHVQQQQQQQALKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNTKRLKRQSSSSIDATPSPSSSSTHPPASNINPLFYGVPSSNNNNNNNNSCDLLNLPSFPGFRVSSGYDNDVQPHLSGLGFSSGIMSNMEATGFGSNESNSFLSAYNSIFGSCSSSASTTLLSSTLLQHKFMNGGGFQGLATPEVEEMQMRERREGERGGVMGCSSLKEVKGELLGEERGRERLEWQNQMMEHTMGFSDPSSSLYWSTSSSPMAASSWNDQPNIGPSVTSLI* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g4237 344 MobiDBLite consensus disorder prediction 324 344 - -
Amo13g4237 344 MobiDBLite consensus disorder prediction 105 151 - -
Amo13g4237 344 ProSiteProfiles Zinc finger Dof-type profile. 61 115 IPR003851 GO:0003677|GO:0006355
Amo13g4237 344 MobiDBLite consensus disorder prediction 120 151 - -
Amo13g4237 344 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 8 327 IPR045174 GO:0003700|GO:0006355
Amo13g4237 344 MobiDBLite consensus disorder prediction 25 56 - -
Amo13g4237 344 Pfam Dof domain, zinc finger 59 115 IPR003851 GO:0003677|GO:0006355
Amo13g4237 344 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-LIKE 8 327 - -
Amo13g4237 344 ProSitePatterns Zinc finger Dof-type signature. 63 99 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g4237 Amo-Chr13 137184793 137187519 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g4237 56 206 C2C2-Dof Transcription Factor Family AT5G65590 47.619 5.21e-35 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Amo13g4237 zf-Dof 7.6e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g4237 - - aip:107631218 514.612