Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g4171 ATGAGAAAACCTTGTTGCGACAAGGAAGGTACCAACAAAGGTGCTTGGTCCAAGCAAGAAGACCAAAAACTCATTGACTACATCCACCTTCATGGCGAAGGCTGTTGGCGTTCCCTTCCAAAAGCCGCCGGCCTTCATCGTTGCGGTAAAAGCTGCCGACTCAGATGGATCAATTATTTACGACCCGACATTAAACGCGGCAACTTTGCCCCTGATGAAGAAGATCTCATCATCAAACTCCATGCCCTCCTTGGCAACCGGTGGTCACTTATAGCGGGAAGGTTGCCAGGACGCACCGACAATGAAGTCAAGAACTACTGGAATTCTCACATCCGCAGAAAGCTCATCAACATGGGAATTGATCCAAACAACCACAAGTTATATCAAACCTCTCCTCTTCCTCACGCTGCTTCTTCCTCATCCCGCCTCAATCTTGACCTAACCATTGCTTTCCCTGCTCATTATTCTTCTTCGCCTACATTTACCCTCGCCCAAGAAGACGACGACAACAACAACAATAATCCTAAACCAACTTCTGAGAACATGGATGAATCCAACCCTACCCTTCTTTTGTTTCAATAA 582 0.4674 MRKPCCDKEGTNKGAWSKQEDQKLIDYIHLHGEGCWRSLPKAAGLHRCGKSCRLRWINYLRPDIKRGNFAPDEEDLIIKLHALLGNRWSLIAGRLPGRTDNEVKNYWNSHIRRKLINMGIDPNNHKLYQTSPLPHAASSSSRLNLDLTIAFPAHYSSSPTFTLAQEDDDNNNNNPKPTSENMDESNPTLLLFQ* 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g4171 193 Pfam Myb-like DNA-binding domain 66 110 IPR001005 -
Amo13g4171 193 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Amo13g4171 193 MobiDBLite consensus disorder prediction 160 193 - -
Amo13g4171 193 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Amo13g4171 193 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 133 - -
Amo13g4171 193 SMART sant 12 62 IPR001005 -
Amo13g4171 193 SMART sant 65 113 IPR001005 -
Amo13g4171 193 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
Amo13g4171 193 Gene3D - 68 132 - -
Amo13g4171 193 CDD SANT 68 111 IPR001005 -
Amo13g4171 193 CDD SANT 15 60 IPR001005 -
Amo13g4171 193 Gene3D - 13 65 - -
Amo13g4171 193 SUPERFAMILY Homeodomain-like 11 107 IPR009057 -
Amo13g4171 193 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Amo13g4171 193 PANTHER MYB TRANSCRIPTION FACTOR 2 133 - -
Amo13g4171 193 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g4171 Amo-Chr13 135284863 135285590 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g4171 2 169 MYB Transcription Factor Family AT4G38620 59.140 1.54e-77 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Amo13g4171 Myb_DNA-binding 4.5e-15 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g4171 13 135284863 135285590 Amo13g4171 13 135284863 135285590 ECH