Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g2362 ATGGATTTGGTGTTCCCCCTGAAACCCCAAACCGCGTTTCTCAAAGTACCCTCCTCTTCAGCCCTCTTCCTCCCCCTTCCTTTCAAGTCCCTTCGTCTTCGTCCAATCTCAGCTACTTCCAAGAACCTCAGGGTTCACTGCGAGCTTGAAAGCAGAGTCAATGGCGCTATTTCTGGTGACTTTGATCCCCGCTTTGTTGACAGGCAAAAAGCACTAGAAGCAGCAATGAATGACATAAACAATTCTTTTGGAAAGGGAAGTGTTACAAGATTGGGCAGTGCTGGGGGAGCTTTAGTTGAAACATTTCCTAGTGGCTGTTTGACCTTGGACTGTGCTTTAGGTGGCGGTCTTCCGAAAGGTAGAATTGTTGAGATATTTGGACCAGAAAGCAGTGGGAAGACTACCATTGCACTTCATGCTATTGCAGAAGTGCAGAAACTAGGAGGAAATGCAATGCTCGTTGATGCTGAGCACGCCTTTGATCCAGCATACTCTAAATCATTAGGAGTGGATGTAGAAAATTTGATTGTCTGCCAACCTGATCACGGAGAGATGGCTCTTGAGATTGCAGATCGAATGTGTAGATCTGGTGCCGTAGATCTCATTTGTGTGGATTCTGTCTCAGCTCTCACTCCACGAGCAGAAATTGAGGGTGAGATTGGAATGCAGCAAATGGGGTTGCAAGCTCGCCTTATGAGTCAAGCTTTACGCAAGATGTCTGGAAATGCCTCAAAAGCTGGCTGTACACTAATATTTTTGAATCAAATAAGATATAAGATTGGCGTCTATTATGGAAATCCAGAAGTGACAAGTGGTGGAATTGCATTGAAGTTCTTTGCGTCAGTTCGGCTAGAAGTTCGTCCTATAGGGAAGATAAAGTCTGCTAAAGGAGATGAAGAAATTGGCCTTAAAGTCCGTGCAAGAGTGCAAAAGAGCAAGGTATCAAGGCCTTACAAAATAGCTGAATTCGAGATTATATTCGGTGAAGGAGTCAGTAAGCTGGGTTGCATTTTAGATTGTGCAGAAATACTGGACATTGTCCTAAAGAAAGGTTCTTGGTACAGCTATGGGGACCATCGATTGGGACAGGGAAGGGAGAAAGCAATACAGTACTTGAAGGAGAACACACACATTTTAGAGGAAATCGAAAAGGTAGTTCGGTCTTCATTGGTCGAGGGAACAAACCAAACAAACCTCGCATTCACAAAGAGCGGTCCAGTTCTCCATCAAGATGATGATATCTTTGATGAAGGTCAGTGA 1260 0.4437 MDLVFPLKPQTAFLKVPSSSALFLPLPFKSLRLRPISATSKNLRVHCELESRVNGAISGDFDPRFVDRQKALEAAMNDINNSFGKGSVTRLGSAGGALVETFPSGCLTLDCALGGGLPKGRIVEIFGPESSGKTTIALHAIAEVQKLGGNAMLVDAEHAFDPAYSKSLGVDVENLIVCQPDHGEMALEIADRMCRSGAVDLICVDSVSALTPRAEIEGEIGMQQMGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEVRPIGKIKSAKGDEEIGLKVRARVQKSKVSRPYKIAEFEIIFGEGVSKLGCILDCAEILDIVLKKGSWYSYGDHRLGQGREKAIQYLKENTHILEEIEKVVRSSLVEGTNQTNLAFTKSGPVLHQDDDIFDEGQ* 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g2362 419 CDD recA 67 390 IPR013765 GO:0003697|GO:0005524|GO:0006281
Amo13g2362 419 Pfam recA bacterial DNA recombination protein 70 332 IPR013765 GO:0003697|GO:0005524|GO:0006281
Amo13g2362 419 ProSiteProfiles RecA family profile 2. 261 336 IPR020587 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Amo13g2362 419 TIGRFAM tigrfam_recA: protein RecA 67 387 IPR013765 GO:0003697|GO:0005524|GO:0006281
Amo13g2362 419 PRINTS RecA protein signature 155 184 IPR013765 GO:0003697|GO:0005524|GO:0006281
Amo13g2362 419 PRINTS RecA protein signature 189 218 IPR013765 GO:0003697|GO:0005524|GO:0006281
Amo13g2362 419 PRINTS RecA protein signature 227 256 IPR013765 GO:0003697|GO:0005524|GO:0006281
Amo13g2362 419 PRINTS RecA protein signature 272 300 IPR013765 GO:0003697|GO:0005524|GO:0006281
Amo13g2362 419 PRINTS RecA protein signature 307 336 IPR013765 GO:0003697|GO:0005524|GO:0006281
Amo13g2362 419 PRINTS RecA protein signature 361 378 IPR013765 GO:0003697|GO:0005524|GO:0006281
Amo13g2362 419 ProSitePatterns recA signature. 275 283 IPR020584 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Amo13g2362 419 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 68 331 IPR027417 -
Amo13g2362 419 SUPERFAMILY RecA protein, C-terminal domain 332 388 IPR023400 -
Amo13g2362 419 Gene3D - 97 399 IPR027417 -
Amo13g2362 419 ProSiteProfiles RecA family profile 1. 98 256 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Amo13g2362 419 PANTHER MITOCHONDRIAL DNA REPAIR PROTEIN RECA HOMOLOG 64 400 - -
Amo13g2362 419 SMART AAA_5 119 290 IPR003593 -
Amo13g2362 419 PANTHER RECA 64 400 IPR013765 GO:0003697|GO:0005524|GO:0006281
Amo13g2362 419 Hamap Protein RecA [recA]. 68 393 IPR013765 GO:0003697|GO:0005524|GO:0006281
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g2362 Amo-Chr13 40790003 40803433 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g2362 13 40790003 40803433 Amo13g2362 13 40790003 40803433 ECH