Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g2302 ATGGGAGAAACACAGCATCACCGTCCAACATCGTCAAGACTTGGGATGAGGGCCGTCCAAGGAGGCCACATTGTGCGGTCCACCGGCCGGAAGGACCGACACAGCAAGGTCTGCACAGCCAAGGGCCCGAGGGACCGCCGTGTGCGACTCTCCGCACACACCGCCATCCAGTTCTACGACGTTCAGGACCGACTCGGCTACGACCGCCCAAGCAAGGCCGTCGACTGGCTCATCAAGAAAGCAAAGGCCGCCATCGACGAGCTCGCCGAGCTCCCCGCATGGAAACCAACTGCCACTACCACGACCGTCGCCGCCGCCGCCGCGGCCTCGAACTCAAATGTTGCTGTTCAGCAGCAGAAGCTCCGGGAGGAGGAGGAAAACCAACAGCTGAATCAAATCGTCCACCGCCAATCGACCACGGTGGACGACGCTATGGAAGCTTCTGGTAGCCGAAAGGCTACCGCACTGGTTGGTGGCAGTGGAAGAATCTCGGAATTTCAACCGCAACATTTGAACGACGATAACGGTAGTAGTGGCAAATACAACAGTGGCGGTTCTGGTTTCTTTCCGCCGACTTTGGACACTGATATAGCTGATACCATTAAGTCTTTCTTTCCGATGGTGGGGCCGGGGGAGCAAGTGCTCTTCGCCGGAACCACCGCACTAGCGTTCGACGGCGGTTCTTCCGGATGGTCTGAACAGCAGCACCACCAAGAGGAACAGGAGCATGGACGATTGCAGAGAATGGTGGCTTGGAATAATGCCGCTGCAGATGCTAGTAGCAGTGGCCATGCCAGTGGATTCATCTTCAACTCGTCGGCGACGGCGGCTGTGCCGTCTCCTGCGATGTTTGGCCATGGCCAGTTTTTTCCTCAGAGGGGACCCCTTCAGTCCAGTAACACCCCTTCGTTTCGTGCTTGGATAGATCCTTCTTCGATCGCCACGGCTGCCATGACTGTGGATCACCACCACTATCTTTCACCGGCCGCGATCCATCAAGCTTCTATTGGGTTTGCCGGCTCTTCATCCGGTAGCTTCTCTGGCTTCCGCATACCAGCACGAATTCAGGGTGCGGAGGAGCACGACGGCGTATCTGACAAGCCCGTTCGATGGTTGTCTTTGAAGATGTTTGACAGTGAACAGCAAGTAAAAGCTCAGCATTGGAATGGATTCTCAGCTGCGAGAGAGTTCAAGATGAGTTTGGACTTTGGATGCTTTGATTTCAATGGCTCACTCAACCCAGATGCAAGGTTAAGCATTTTCTCTATGACAAAACTGGGCAAACCCAAATAA 1293 0.5522 MGETQHHRPTSSRLGMRAVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKAAIDELAELPAWKPTATTTTVAAAAAASNSNVAVQQQKLREEEENQQLNQIVHRQSTTVDDAMEASGSRKATALVGGSGRISEFQPQHLNDDNGSSGKYNSGGSGFFPPTLDTDIADTIKSFFPMVGPGEQVLFAGTTALAFDGGSSGWSEQQHHQEEQEHGRLQRMVAWNNAAADASSSGHASGFIFNSSATAAVPSPAMFGHGQFFPQRGPLQSSNTPSFRAWIDPSSIATAAMTVDHHHYLSPAAIHQASIGFAGSSSGSFSGFRIPARIQGAEEHDGVSDKPVRWLSLKMFDSEQQVKAQHWNGFSAAREFKMSLDFGCFDFNGSLNPDARLSIFSMTKLGKPK* 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g2302 430 Coils Coil 107 133 - -
Amo13g2302 430 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 1 210 IPR005333 GO:0003700
Amo13g2302 430 MobiDBLite consensus disorder prediction 26 44 - -
Amo13g2302 430 PANTHER TRANSCRIPTION FACTOR TCP4 1 210 - -
Amo13g2302 430 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 214 368 IPR005333 GO:0003700
Amo13g2302 430 MobiDBLite consensus disorder prediction 165 187 - -
Amo13g2302 430 ProSiteProfiles TCP domain profile. 30 88 IPR017887 -
Amo13g2302 430 MobiDBLite consensus disorder prediction 1 44 - -
Amo13g2302 430 Pfam TCP family transcription factor 29 137 IPR017887 -
Amo13g2302 430 PANTHER TRANSCRIPTION FACTOR TCP4 214 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g2302 Amo-Chr13 39589163 39591215 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g2302 3 368 TCP Transcription Factor Family AT1G53230 41.966 1.82e-79 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Amo13g2302 TCP 6.8e-34 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g1034 18 16900277 16903150 Amo13g2302 13 39589163 39591215 ECH
Amo13g2103 13 33461170 33462186 Amo13g2302 13 39589163 39591215 ECH
Amo13g2302 13 39589163 39591215 Amo13g2302 13 39589163 39591215 ECH
Amo13g2302 13 39589163 39591215 Amo03g0175 03 3356303 3359726 hybridization
Amo13g2302 13 39589163 39591215 Amo18g1034 18 16900277 16903150 PCT
Amo13g2302 13 39589163 39591215 Amo08g1311 08 21318711 21321629 PCT