Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g2103 ATGGGGATGAGGAGCAATAGTAATAAAGGAGGAGAAATTATTCAAGTTGAAGGGGGCCACATTGTGAGGTCCACAGGGAGAAAAGACCGCCACAGCAAGGTCTACACCGCCAAAGGACCACGCGATAGAAGGGTCAGGCTATCCGCCCACACCGCCATCGAATTCTACGACGTTCAGGACCGTCTCGGCTACGACCGCCCCAGCAAAGCCCAATTCCTTCAGATTCAGCAACAGCAGCAACAAAACCTTGAAACTGACCCCATAGCTTTCTTCCCTACAAGCTCAGCTACTCCCTCTATGAATTTCCAAAACTACCCTCACWAGATGATTTCAAGAACCGCCAACAACAACGTTAACCCCATTACGGAAGATCTTGGACTTTCACTCCACCCGTTTCAACAAGCACCTTCWAATCAACATCAAGGTACTCTCTTTGWTGCTGGATCCAGTAACAACGTCGGATTTGAGAGCCAGTATCAGAAGATTGTAGCTTGGAACAACGAAGCTGCTACCATGGATATCAACAGGGTAGGGTTCATGGTGAACCCGCAGCAGAATCATCATCATCATCCATTTCTAGGCCAAAGTGTGAGTGGGTCCCTTCAGTCAAGTTTTCCACCACCATCACTTAGATCTTGGGGTGAAATTCMGATGAACCCAAACTCCTCGGAACAACAACACAGCAGGCCACAACAACTGATTCACCATGCTTCCATATTTGGAAGCAGRTTTGTTTCTGATGGATTAGCAGCAGGGTTTTGCATTCCAGCTAGAATTCAAGGCGACCAAGAGAACCATCATGGAGTTGCTTCTAACACCACTCCATCTTCTGCTTCTCCTCATTCTCACCACTGA 855 0.4749 MGMRSNSNKGGEIIQVEGGHIVRSTGRKDRHSKVYTAKGPRDRRVRLSAHTAIEFYDVQDRLGYDRPSKAQFLQIQQQQQQNLETDPIAFFPTSSATPSMNFQNYPHXMISRTANNNVNPITEDLGLSLHPFQQAPSNQHQGTLFXAGSSNNVGFESQYQKIVAWNNEAATMDINRVGFMVNPQQNHHHHPFLGQSVSGSLQSSFPPPSLRSWGEIXMNPNSSEQQHSRPQQLIHHASIFGSRFVSDGLAAGFCIPARIQGDQENHHGVASNTTPSSASPHSHH* 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g2103 284 PANTHER TRANSCRIPTION FACTOR TCP4 83 284 - -
Amo13g2103 284 MobiDBLite consensus disorder prediction 264 284 - -
Amo13g2103 284 MobiDBLite consensus disorder prediction 1 31 - -
Amo13g2103 284 PANTHER TRANSCRIPTION FACTOR TCP4 8 70 - -
Amo13g2103 284 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 8 70 IPR005333 GO:0003700
Amo13g2103 284 MobiDBLite consensus disorder prediction 187 232 - -
Amo13g2103 284 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 83 284 IPR005333 GO:0003700
Amo13g2103 284 Pfam TCP family transcription factor 26 70 IPR017887 -
Amo13g2103 284 ProSiteProfiles TCP domain profile. 27 85 IPR017887 -
Amo13g2103 284 MobiDBLite consensus disorder prediction 265 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g2103 Amo-Chr13 33461170 33462186 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g2103 1 172 TCP Transcription Factor Family AT2G31070 40.789 7.32e-41 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Amo13g2103 TCP 3.1e-20 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g2103 13 33461170 33462186 Amo13g2302 13 39589163 39591215 ECH
Amo13g2103 13 33461170 33462186 Amo13g2103 13 33461170 33462186 ECH