Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0406 ATGGTTTTCTCTTCTATTCCAGTCTATGTAGATCCTCCCAATTGGCAGCAGCAAGGGAATGTCAATGATAACCCTCACCTACTTCCGCCGCTACCCCCACAGGTTCAGGCAGGACCTGTGGGAGGAGGCGGCGCAATTGCTGGCTCGATCAGACCTGGGTCAATGGCTGATCGAGCCAGGCTAGCAAAGATACCACCTCCAGAGGCTGCCCTCAAGTGTCCTCGTTGCGATTCCACGAACACCAAGTTCTGTTACTTCAACAATTACAGCCTGTCTCAGCCCCGCCACTTCTGCAAGGCCTGTAGGCGCTACTGGACAAAAGGTGGCACTCTGAGGAACGTTCCGGTGGGCGGTGGTTGCCGCCGTAACAAGAAGAACAAGAGGAGTAGTAGCCGGTCGAAATCTCCACCAAACAATAACAATGAAAAGCAACAATCATCGAGTGCAATTCCTTCAAACAACATCCCTCCTCATGAGCTGATTGGTCATCAACCACCAAACCTTCCTTTCATGGCTTCTCTCCAGAATCATCTTAGCCGCTATGGTGGGGGAGGAGGAGTTGCTTCAAACATGGGTCTGAGCTTAACGGATCATCATCCTCACATGGGGTTTGTTGGTAATGGAGGAGTAGTGGATCAGTGGCGGCTGCAGCAGTTTCCGTTCTTAAACGGTTTTGATTCGAATTCTTCTTCAGCTGCAGTAGCATCGTCGATATCATACCCTAACACTTTTCATCATGAAAATGATCATCATCAAGGTATTGGTGGTGGTGAAGCAGTAGGTTCTTCAGGCTTGGTTGTTGGTGTTGACATAGCTGGAAATTCTAGGGTTAATAATAATCAGATGCAACCACCAGTGAAAATGGAAGAAAACGGAGCCATGAATTTGTCATCAAGAACAACAACAACCAACTTGAATGTCTCTCATCATCATCAAAATCATCAATACTATTCTTGGAACACTGATATGTCAGCTCTAGCTGCTTCTTCTTCCACTCCTCATAATCTCTTATAA 1014 0.4714 MVFSSIPVYVDPPNWQQQGNVNDNPHLLPPLPPQVQAGPVGGGGAIAGSIRPGSMADRARLAKIPPPEAALKCPRCDSTNTKFCYFNNYSLSQPRHFCKACRRYWTKGGTLRNVPVGGGCRRNKKNKRSSSRSKSPPNNNNEKQQSSSAIPSNNIPPHELIGHQPPNLPFMASLQNHLSRYGGGGGVASNMGLSLTDHHPHMGFVGNGGVVDQWRLQQFPFLNGFDSNSSSAAVASSISYPNTFHHENDHHQGIGGGEAVGSSGLVVGVDIAGNSRVNNNQMQPPVKMEENGAMNLSSRTTTTNLNVSHHHQNHQYYSWNTDMSALAASSSTPHNLL* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0406 337 MobiDBLite consensus disorder prediction 132 154 - -
Amo13g0406 337 ProSitePatterns Zinc finger Dof-type signature. 73 109 IPR003851 GO:0003677|GO:0006355
Amo13g0406 337 ProSiteProfiles Zinc finger Dof-type profile. 71 125 IPR003851 GO:0003677|GO:0006355
Amo13g0406 337 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 13 330 IPR045174 GO:0003700|GO:0006355
Amo13g0406 337 Pfam Dof domain, zinc finger 70 125 IPR003851 GO:0003677|GO:0006355
Amo13g0406 337 PANTHER DOF DOMAIN ZINC FINGER PROTEIN 13 330 - -
Amo13g0406 337 MobiDBLite consensus disorder prediction 112 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0406 Amo-Chr13 5421808 5423459 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g0406 46 256 C2C2-Dof Transcription Factor Family AT3G55370 44.444 1.06e-48 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Amo13g0406 zf-Dof 4.9e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0406 - - aip:107629110 585.874