Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0345 ATGGATCCTTCTAGTGGACAACAGAACCACCAGCAAATGGCAAACAATAATAACAATCAGTCACTAGAAAGCATGATGTTGGGTTGCACAAAACAAGAACAACAACAAGAGAAGAAGCCAAGGCCACAACCAGAACAAGCATTGAAATGTCCAAGATGTGATTCAACAAACACAAAGTTCTGTTACTACAACAACTACAGTCTCTCACAGCCAAGGTACTTCTGCAAATCTTGCAGAAGGTACTGGACAAAAGGAGGAACATTGAGGAATGTTCCAGTAGGTGGAGGCTGCAGAAAGAACAAAAGATCATGTTCTTCTTCATCAAAGAGAGCTCAAGATCAATTACCCTTTAACCCAGATCATAACCCTCTCATGAATTCTCTCCCTCCATTGTCATATGACTCTGAATTCACACTTGCATTGGCTAGGCTCCAAAAACAAACAGGTGGTGTGCATCTTGGTCTTGATGACCACCATGATCTCTCAATGTTGGTGAACCACACTAACACTAACACCAACACCACAACACAACAACAACAACAACAACAACAACAAGGATTCTTGGATGCACTTAGAAGCAATGGATTCAACAGCAACACCATGCATAGTGATTTGTACTATGGTGGAAATGGGGACATGGGTGAGGTTTATAATGAGATTATGCTTCCTTATGAGCAAGAAATGAGTGTTGAAACAACTCAAGCAGTTACTGTCACAACCACAAAGCAAGAACTCTGCAATGTTAGTTATAATTGCAATAATACTAATAATAATAATAAGGTTTTGTGGGGTTTTCCATGGCAGATCAATGGAGAAACAAACATGCTTGGAGATATTGATTTATCAAGAGCAAGTTGGAATGGTAATGGTCCTCTCACTACTCCATTATCTTGGCATGGACTTCTCAATAGTCCCCTAATGTAG 924 0.4004 MDPSSGQQNHQQMANNNNNQSLESMMLGCTKQEQQQEKKPRPQPEQALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSCSSSSKRAQDQLPFNPDHNPLMNSLPPLSYDSEFTLALARLQKQTGGVHLGLDDHHDLSMLVNHTNTNTNTTTQQQQQQQQQGFLDALRSNGFNSNTMHSDLYYGGNGDMGEVYNEIMLPYEQEMSVETTQAVTVTTTKQELCNVSYNCNNTNNNNKVLWGFPWQINGETNMLGDIDLSRASWNGNGPLTTPLSWHGLLNSPLM* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0345 307 ProSitePatterns Zinc finger Dof-type signature. 50 86 IPR003851 GO:0003677|GO:0006355
Amo13g0345 307 PANTHER DOF ZINC FINGER PROTEIN DOF3.2-LIKE 15 306 - -
Amo13g0345 307 Pfam Dof domain, zinc finger 46 102 IPR003851 GO:0003677|GO:0006355
Amo13g0345 307 ProSiteProfiles Zinc finger Dof-type profile. 48 102 IPR003851 GO:0003677|GO:0006355
Amo13g0345 307 MobiDBLite consensus disorder prediction 94 120 - -
Amo13g0345 307 MobiDBLite consensus disorder prediction 1 33 - -
Amo13g0345 307 MobiDBLite consensus disorder prediction 1 49 - -
Amo13g0345 307 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 15 306 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0345 Amo-Chr13 4667736 4669093 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g0345 46 307 C2C2-Dof Transcription Factor Family AT2G28510 42.857 1.25e-48 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Amo13g0345 zf-Dof 6.4e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0345 - - gmx:100799737 306.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g0345 13 4667736 4669093 Amo13g0345 13 4667736 4669093 ECH
Amo18g0438 18 5806442 5808019 Amo13g0345 13 4667736 4669093 PCT
Amo08g1078 08 18182042 18183672 Amo13g0345 13 4667736 4669093 PCT
Amo13g0345 13 4667736 4669093 Amo18g0438 18 5806442 5808019 PCT
Amo13g0345 13 4667736 4669093 Amo08g1078 08 18182042 18183672 PCT