Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0331 ATGATGTCTGAAGAACCCTTTTCTTCTGTTCTTCCTCCCAACACCACCATCACAAGCACCTTGGTTCATCTCCAAGACCCAACCTCAAACCCTAGTAGCAATAACTCAAAACCTAATTCAAATCAACCCACCAAGAAGAGGAGAAATCTTCCTGGAACACCAGATCCGGATGCAGAAGTGATAGCTATGTCACCAAAGTCGTTGATGGCGACGAACCGTTTCGTATGCGAAATCTGCAACAAGGGTTTCCAGAGGGACCAGAACTTGCAGCTGCATAGGAGAGGACACAACCTTCCATGGAAGCTAAAGCAAAGAAACAAAGAAGAACAAGTGAGGAAGAAGGTGTACGTGTGCCCGGAGAAGTCTTGCGTGCACCATGACCCTTGTAGAGCACTGGGGGACCTCACAGGTATCAAGAAACACTACAGCAGGAAGCATGGCGAGAAGAAATGGAAGTGTGACAAGTGTTCCAAGAAATACGCTGTTCATTCTGATTGGAAGGCCCATGCCAAGATCTGCGGGACTCGGGAGTACAAGTGCGACTGCGGCACCATTTTCTCCCGGAAGGACAGCTTCATAACACACAGAGCATTTTGTGATGCATTGGCTGAAGAAGGTGCAAGAATAAGCTCAGTTCCAACAACTTTGAGCAACTTGATGGGTAGAAGAGATCATAATCATCATCATCATCATCATCATCATCAATTAGCAACAAGTAGAATCATCCCTCGTCATCACATTCTTCCAAGTGCTGGATTTCACTCGGAATTTGGTGGTGGTGGTGGTGGTTATTATTCAGATCAGAAGCTGATGATGATGAGGAACAATAATATCAACAACAACAATAATATTCAGATTCCACTATGGTTAGACCAGGGCAATAGCAATAACAATCATAATCATGTTAGTGGCATTTCATCAAACACTAGTAGTGCATGCACCAATGGCAACACTATTATTATGCCTCATCATGATGTAGTGAACAACTCTATGTTTGGATCACAACAATGGCAGCAGAATCCAGAAGCATCATCATCATCACTCACAAACAATAACAACAATGCCAACGTGGCTATGATGATGCCACCACCACATGCAGGATTAAAGCAAGAACAAGATGACATGTTCTATTTTGGTGCTAGTAATTACCATCATCATCACCACATAATGTTACAAAAAGCATCACAAATTGGAGGAGGTGATGAGTTGGTGAATTTGGAAGGTAGCATCAGTAGTAGTAACATGATTATTCCTCCATTAATATTGAATCCAAGGAGGCCATCAAAGAATGATAATAAAGATGAAGATGATGAACTGGGTTTAACAAGGGATTTTCTTGGAGTTGGAGAAGATGAATCAACAATGAGCAACACTAGGCCATTGATGTTACAGCAACACCTAGCTGACTTCACAGCCATGGATATGCATCATCAAACCCACTACAGTAGTAGTAGTGGACATTACTACTTACAGGTAAATGATGAAGAAATAGATGGATGA 1500 0.4233 MMSEEPFSSVLPPNTTITSTLVHLQDPTSNPSSNNSKPNSNQPTKKRRNLPGTPDPDAEVIAMSPKSLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNKEEQVRKKVYVCPEKSCVHHDPCRALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVHSDWKAHAKICGTREYKCDCGTIFSRKDSFITHRAFCDALAEEGARISSVPTTLSNLMGRRDHNHHHHHHHHQLATSRIIPRHHILPSAGFHSEFGGGGGGYYSDQKLMMMRNNNINNNNNIQIPLWLDQGNSNNNHNHVSGISSNTSSACTNGNTIIMPHHDVVNNSMFGSQQWQQNPEASSSSLTNNNNNANVAMMMPPPHAGLKQEQDDMFYFGASNYHHHHHIMLQKASQIGGGDELVNLEGSISSSNMIIPPLILNPRRPSKNDNKDEDDELGLTRDFLGVGEDESTMSNTRPLMLQQHLADFTAMDMHHQTHYSSSSGHYYLQVNDEEIDG* 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0331 499 Gene3D Classic Zinc Finger 53 126 - -
Amo13g0331 499 PANTHER PROTEIN INDETERMINATE-DOMAIN 13-RELATED 27 459 - -
Amo13g0331 499 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 27 459 - -
Amo13g0331 499 SMART c2h2final6 151 171 IPR013087 -
Amo13g0331 499 SMART c2h2final6 74 96 IPR013087 -
Amo13g0331 499 SMART c2h2final6 116 146 IPR013087 -
Amo13g0331 499 ProSiteProfiles Zinc finger C2H2 type domain profile. 74 96 IPR013087 -
Amo13g0331 499 SUPERFAMILY beta-beta-alpha zinc fingers 73 171 IPR036236 -
Amo13g0331 499 MobiDBLite consensus disorder prediction 1 59 - -
Amo13g0331 499 ProSitePatterns Zinc finger C2H2 type domain signature. 76 96 IPR013087 -
Amo13g0331 499 MobiDBLite consensus disorder prediction 8 48 - -
Amo13g0331 499 Gene3D Classic Zinc Finger 130 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0331 Amo-Chr13 4437540 4440478 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g0331 44 239 IDZ Gene Family AT3G45260 75.124 9.36e-111 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Amo13g0331 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0331 K25870 - ahf:112736536 474.552
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g0331 13 4437540 4440478 Amo13g0331 13 4437540 4440478 ECH