Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g0124 ATGGAAGGGATAGGTCCCAACAACAATTCATGCACAACAAGGCCTCATAATGAAGGTGGTGGTGGAAATAACAACAACAATTTAGAGAAGAAAGCAAGACCACAAGAGCAATTGAATTGTCCAAGGTGCAATTCAACAAACACAAAGTTTTGCTACTACAACAACTATAGCCTCACACAACCAAGGTATTTTTGCAAGACTTGTAGAAGGTATTGGACTGAAGGTGGGTCCCTCAGGAATGTTCCTGTTGGTGGAGGACAAGATCTTAATCTTGCTTTCCCATCTATGGATCATCACAACAATTATCATCATGCTTTGGAGCTTTTAAGGTCAAGCATGGCTTCTAGGGGTTTGAGTAATCCATATTATGCTTCTTCTAATTCTTCATTGGTACCATCAAATTCATCAAGTGTAATTTACCCTACTTCTGGATTAGGGTTTCCAACCATGCAAGAAGTAGTTAATAATAATAAGCAAAATAGTGGAAGAGTTCTTTTCCCTTTTGGAGAGGTGATGAAGAGTGCTGAAGAAAACAACAACAAAGAACAAGGGAATAATTCATCAAGCACTGCCAATGGTGGATATTGGAATGGAATGATGGGTCAAGGGTCATGGTGA 618 0.3932 MEGIGPNNNSCTTRPHNEGGGGNNNNNLEKKARPQEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGQDLNLAFPSMDHHNNYHHALELLRSSMASRGLSNPYYASSNSSLVPSNSSSVIYPTSGLGFPTMQEVVNNNKQNSGRVLFPFGEVMKSAEENNNKEQGNNSSSTANGGYWNGMMGQGSW* 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g0124 205 MobiDBLite consensus disorder prediction 177 197 - -
Amo12g0124 205 ProSiteProfiles Zinc finger Dof-type profile. 38 92 IPR003851 GO:0003677|GO:0006355
Amo12g0124 205 PANTHER DOF ZINC FINGER PROTEIN DOF3.7 156 201 - -
Amo12g0124 205 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 16 87 IPR045174 GO:0003700|GO:0006355
Amo12g0124 205 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 156 201 IPR045174 GO:0003700|GO:0006355
Amo12g0124 205 PANTHER DOF ZINC FINGER PROTEIN DOF3.7 16 87 - -
Amo12g0124 205 MobiDBLite consensus disorder prediction 178 197 - -
Amo12g0124 205 MobiDBLite consensus disorder prediction 1 39 - -
Amo12g0124 205 Pfam Dof domain, zinc finger 36 87 IPR003851 GO:0003677|GO:0006355
Amo12g0124 205 ProSitePatterns Zinc finger Dof-type signature. 40 76 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g0124 Amo-Chr12 1846651 1847580 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g0124 30 205 C2C2-Dof Transcription Factor Family AT3G61850 38.628 7.56e-43 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Amo12g0124 zf-Dof 1.4e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g0124 - - adu:107463629 384.415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g1282 16 22044403 22046220 Amo12g0124 12 1846651 1847580 PCT
Amo12g0124 12 1846651 1847580 Amo16g1282 16 22044403 22046220 PCT