Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g2429 ATGCAGGAGATACATTCAATGGGAGGCACCAGGTTCTTCGGCGCCGCTGCTGACAGGAGGCTCAGGCCACACCACCACCACCCTCACCAGAACACCGCTACCAACTGCCACCAGCAGCAAGCACTTAAATGTCCCCGTTGTGACTCACTCAACACCAAGTTCTGTTACTACAACAACTACAACCTCTCCCAGCCACGCCACTTCTGCAAGAACTGCCGCCGCTACTGGACCAAAGGCGGCGTCCTCCGCAACGTCCCTGTCGGCGGCGGTTGCCGCAAGTCCAAGCGTTCCAACGACAACAAGACCGCCAAAACCAGCAAAAATAATAATAGTAATAATAATAGCGCCACCGCAACTTCCTCCGCGGAAACGCCGCCGCAAACGACGTCGTCTCAGGCTCCACCGACGGACCAGAACTCCAATTCTCACTCCAGCAGCGAGAGCTCTAACCTCACCGCGGCGGCGGCGGCGGCGACCATCGGCACGACGGAGCTTAACTCTGATTCTTCCAAGTTGTTGATCCACGAGAATAACAACAACAACGCTTCCTCGAACCCTAATTTGGAGAGCGGTATTTTCTCTGAGATAGGGACGCTGACGAGCTTGATGGTTTCTTCCTCTTCGAACAACGATGCATTGGCGTTTGGATTTGGAGGTGGTGGTGTTGTTCCTGATGCGACGTCGTTTCAGTGGCATCAGCAGCAGAAGTTGCCGGAGAATCTGAACGGTAGTGGTGGGAGCTTGCTGGATCATCATGGACACGGTAGTACTGTAACCGTTGATTTGTCGGCACTTCAGAGCAAGACGGGAAACGGTGGATTTGGACCGTTGGATTGGCAAGCTGGTGTGGATCAAGGTTTGTTTGATCTCCCCAACTCCGTTGATCATGCTTACTGGAGTCAAACTCAATGGCCTGATCACGATAATTCTAATCTCTTTCATCTCCCCTGA 951 0.5331 MQEIHSMGGTRFFGAAADRRLRPHHHHPHQNTATNCHQQQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKSKRSNDNKTAKTSKNNNSNNNSATATSSAETPPQTTSSQAPPTDQNSNSHSSSESSNLTAAAAAATIGTTELNSDSSKLLIHENNNNNASSNPNLESGIFSEIGTLTSLMVSSSSNNDALAFGFGGGGVVPDATSFQWHQQQKLPENLNGSGGSLLDHHGHGSTVTVDLSALQSKTGNGGFGPLDWQAGVDQGLFDLPNSVDHAYWSQTQWPDHDNSNLFHLP* 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g2429 316 PANTHER DOF ZINC FINGER PROTEIN 4 25 303 - -
Amo11g2429 316 MobiDBLite consensus disorder prediction 86 155 - -
Amo11g2429 316 MobiDBLite consensus disorder prediction 103 155 - -
Amo11g2429 316 ProSitePatterns Zinc finger Dof-type signature. 44 80 IPR003851 GO:0003677|GO:0006355
Amo11g2429 316 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 25 303 IPR045174 GO:0003700|GO:0006355
Amo11g2429 316 ProSiteProfiles Zinc finger Dof-type profile. 42 96 IPR003851 GO:0003677|GO:0006355
Amo11g2429 316 Pfam Dof domain, zinc finger 40 96 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g2429 Amo-Chr11 128928038 128930494 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g2429 18 316 C2C2-Dof Transcription Factor Family AT5G60850 41.118 4.63e-55 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Amo11g2429 zf-Dof 3e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g2429 - - adu:107468949 532.717
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo11g2429 11 128928038 128930494 Amo11g2429 11 128928038 128930494 ECH
Amo11g2429 11 128928038 128930494 Amo10g2541 10 87967973 87969560 PCT
Amo10g2541 10 87967973 87969560 Amo11g2429 11 128928038 128930494 PCT