Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g2255 ATGGAGGACCAAAGTACTGTTACTATTAGGGACCCTGCAATTAAGCTTTTTGGTCAGAAGATTCCCCTTCCCGGAGATCCTGATGTTCTTCCCGCCGCGGCCATGGACCATGAACAGGACCTGCATGAAGAAGACGAAGAAGAGGAGGAGGACCAGGATTACGACGAGGAAGACGGAGAAACCCAAGACACTCACGAGGACAAGGATGCAGAAGCTGAAAATCTTACCACCCAAGAGCAAGAAGCTGATCCTCCTCCAAATGTAGAAGAGRACAAGAAATCAGCCACATCACCTGAGGCTATGGTGAATCCGAAAACACCTGCCATAGAAGAAGATTCTGCAAAATCAAAAAGTGACAAGTCAGATAAGGAACAAGGTGACACATCCAKTCCACAAGATCAGAAACCCCTGAARAAGCCTGATAAGTTGCTTCCATGCCCCCGCTGCAATAGCATGGATACTAAATTCTGTTACTACAACAACTACAAYGTAAACCAGCCACGTTATTTCTGCAAAGCCTGTCAACGATACTGGACTGCAGGTGGCACCATGAGGAATGTGCCGGTTGGAGCAGGGCGGCGAAAAAACAAGAACTCTGCCAACCATTATCGCCACATCACAATCTCTGAGGCTCTTCAAGCAGCTAGAATTGATGCTCCTAACGGGACTCATCTCCCTGCTTTGAAAAGCAATGRGAGAGTCCTCAGYTTCKGAATWGATGCCCCAATCTGCGATTCCATGGCATCTGTCCTTAACCTTGGAGAGAAAAAGGTTCTTAATGGCACAAGAAATGGATTCCATCATGGCTTTGATGATCAAAGATTGAAAGTTCCTTCCAAAAGTGGTGAAAAYRGCGAAGCTTGCACGAGTTCATCGCCTGTTGCAGTTTCAAATCCAATGGGGGAAAACAGTAAAAGTACTTTCCAAGAACCAATGCTTCCAAGCAACGGTTACCTTCCTCAAGTTCCTTGTATTGCTAGTGTTCCTTGGCCTTATCCGTGGAATGCGGCAATTCCCTCACCAGCTATGTGTCCTCCAGGATTTCCTGCCCTTCCATTCTATCCTGCGGCYTTTTGGAACTGCAGCATGCCAGGGAACTGGAATGTTCCATGGTTTCCTCCACAGTCCTCCCCTTCAAACCCAAAATCTCCAAGTTCCGGACCGAATTCTCCAACTCTGGGGAAGCAYTCTAGGGAYGGTGACACGGGTAACCAAGATTCTTTGAGCAAAGAAGAGCCACCAAAGCAGAGAAATGGAAGCGTTTTGGTTCCCAAAACGTTGAGAATYGATGACCCAAGTGAAGCTGCAAAGAGTTCTATATGGGCAACTCTAGGGATCAAGAATGAATCCATTAGTGGGGGAGGCATGTTTAAGGCCTTCCAATCAACAAAAGAAGAAAAGAATCAAGTCGAAGCTTCTCCTGTGTTGCGGGCTAACCCTGCAGCTTTGTCAAGATCCCTTAATTTTCACGAGAGCTCGTGA 1482 0.4649 MEDQSTVTIRDPAIKLFGQKIPLPGDPDVLPAAAMDHEQDLHEEDEEEEEDQDYDEEDGETQDTHEDKDAEAENLTTQEQEADPPPNVEEXKKSATSPEAMVNPKTPAIEEDSAKSKSDKSDKEQGDTSXPQDQKPLKKPDKLLPCPRCNSMDTKFCYYNNYNVNQPRYFCKACQRYWTAGGTMRNVPVGAGRRKNKNSANHYRHITISEALQAARIDAPNGTHLPALKSNXRVLSFXIDAPICDSMASVLNLGEKKVLNGTRNGFHHGFDDQRLKVPSKSGENXEACTSSSPVAVSNPMGENSKSTFQEPMLPSNGYLPQVPCIASVPWPYPWNAAIPSPAMCPPGFPALPFYPAAFWNCSMPGNWNVPWFPPQSSPSNPKSPSSGPNSPTLGKHSRDGDTGNQDSLSKEEPPKQRNGSVLVPKTLRIDDPSEAAKSSIWATLGIKNESISGGGMFKAFQSTKEEKNQVEASPVLRANPAALSRSLNFHESS* 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g2255 493 Pfam Dof domain, zinc finger 142 198 IPR003851 GO:0003677|GO:0006355
Amo11g2255 493 MobiDBLite consensus disorder prediction 450 476 - -
Amo11g2255 493 MobiDBLite consensus disorder prediction 270 309 - -
Amo11g2255 493 MobiDBLite consensus disorder prediction 399 413 - -
Amo11g2255 493 MobiDBLite consensus disorder prediction 110 142 - -
Amo11g2255 493 MobiDBLite consensus disorder prediction 1 144 - -
Amo11g2255 493 MobiDBLite consensus disorder prediction 40 64 - -
Amo11g2255 493 ProSitePatterns Zinc finger Dof-type signature. 146 182 IPR003851 GO:0003677|GO:0006355
Amo11g2255 493 PANTHER CYCLIC DOF FACTOR 1 9 492 - -
Amo11g2255 493 MobiDBLite consensus disorder prediction 370 429 - -
Amo11g2255 493 MobiDBLite consensus disorder prediction 283 309 - -
Amo11g2255 493 PANTHER CYCLIC DOF FACTOR 2 9 492 IPR045174 GO:0003700|GO:0006355
Amo11g2255 493 ProSiteProfiles Zinc finger Dof-type profile. 144 198 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g2255 Amo-Chr11 122654568 122658167 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g2255 10 491 C2C2-Dof Transcription Factor Family AT3G47500 46.293 7.62e-122 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Amo11g2255 zf-Dof 2.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g2255 - - gmx:778113 680.248