Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g1061 ATGGAACGTGTCAGTGATAAAAATCSTCCACAACCACCACGTTCTCGTGAGTTTCTTGAAACAGTTGAAGAGATCACCCGAATCTACCGGTCACTGCCACCTCGACCTTCCATAGAGGAACTTGAAGCTGCCACGTCAGCCTTGGAAACCGTGAACAGCGAGGAGCAATCGAAGCTCAACGAAATCTCGYAGCAACAGCCGCCACGTGGCATCCCRGATGACCTGTTCTCTGTTCTGAWGGATCTCAAGAAGAGCGTGGTGGTTTTCCAGAGCCACCAGCAGAGGAAAGAGGCGCTTCATGTTATTGACATGGAGAAGATGTTTCAAAACTTCGGTGACCTTATTCAGAGAGCGTCTGAGTTGGTCTCCGGCGGTGGCGGCGGCGGCGGCGGTGACGGTGTTGGCACTGAGATTGATGAGGTTGCTGGTGAGAGGTTGGTGGTGATGAAGAAGATAGAGGAAGCGGAAGAGGAAGAGGAGGATGAAGAGGCACGAAAGAATGTTTTGAAGAAGAGTTCATCGGCGAAGAAGTTGTTCTCTCAAGGCACTGGAAGCTCTGAGAAATTAAGTATCATGAAAGTCGCTACTGTTATTGAAACTTGTGCTAAAAATGGAGACACAAAGCTTGAGCTTAAAGGGAAATTGGAGGAACAAATGGAATGGTTACCCCTTTCAATTGGGAAACTATCTCATGTAACTGAAATAGACCTATCCGAAAACAGAATCATGGCTCTTCCAACAACAATTGTGGGTCTCAAGGCCTTAACAAAGCTAAATCTTTCCTCCAACCAGCTCATAAACCTTCCCCAATCATTTGGCGAATTGATTAACCTTGTCGAGCTCAACCTCCGCTGCAACAAAATGAAGACCCTCCCAGCTTCGTTTGGTAACTTGAAAAATCTCGCTGAACTCGACTTGAGTTTGAATGAGTTCTCAGTTTTGCCAGAGACGATCGGGGGTTTAAGCAGCCTTAGGAGGCTGAATGTCGAGACAAATGAACTTGAGGAGCTGCCATACACAATTGGAAACTGTTCAATGCTATCTATTTTGAACTTAGATTTCAATCAGCTAAAGGCCATTCCCGAGGCAATAGGGAAGCTTGGGAGCTTGGAGATTCTCACTTTGCACTATAACAGAGTTAAAAGGTTGCCTTCTACAATAGGTAATCTAATGAACTTGAAGGAACTTGATGTTAGCTTCAATGAACTTGAATTCATACCTGAAAACCTGTGTTTGGCCGTAAATTTGAGGAAACTAAATGTTGGAAAGAACTTCGCGGACCTACGAGCCTTGCCGGAAACAATTGGAAATCTCGAGAAGCTCGAGGAGTTGGAGATAAGTGACGATCAAATAAGAGCTTTGCCCGAATCTTTCAGGCTCTTGTCTAATTTGAGAGTTTTCCGTGCCGATGAGACTCCTCTTGTGGTTCCCCCAAGAGAAGTGATTAAGTTGGGTGCTCAGGAAGTTGTGCAATACATGGCTAATTTTGTCGCTGAGAGGGATGCAAAATTTGTGTCATCAAAAAATAAGAATAAAAGGAAGAGTATTCGATTCTGGCTTTGCTTCGGATTCTGTTTTGAGGAGTGA 1587 0.4486 MERVSDKNXPQPPRSREFLETVEEITRIYRSLPPRPSIEELEAATSALETVNSEEQSKLNEISXQQPPRGIPDDLFSVLXDLKKSVVVFQSHQQRKEALHVIDMEKMFQNFGDLIQRASELVSGGGGGGGGDGVGTEIDEVAGERLVVMKKIEEAEEEEEDEEARKNVLKKSSSAKKLFSQGTGSSEKLSIMKVATVIETCAKNGDTKLELKGKLEEQMEWLPLSIGKLSHVTEIDLSENRIMALPTTIVGLKALTKLNLSSNQLINLPQSFGELINLVELNLRCNKMKTLPASFGNLKNLAELDLSLNEFSVLPETIGGLSSLRRLNVETNELEELPYTIGNCSMLSILNLDFNQLKAIPEAIGKLGSLEILTLHYNRVKRLPSTIGNLMNLKELDVSFNELEFIPENLCLAVNLRKLNVGKNFADLRALPETIGNLEKLEELEISDDQIRALPESFRLLSNLRVFRADETPLVVPPREVIKLGAQEVVQYMANFVAERDAKFVSSKNKNKRKSIRFWLCFGFCFEE* 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g1061 528 Coils Coil 138 172 - -
Amo11g1061 528 Gene3D Ribonuclease Inhibitor 172 514 IPR032675 -
Amo11g1061 528 Pfam Leucine rich repeat 227 265 IPR001611 GO:0005515
Amo11g1061 528 Pfam Leucine rich repeat 277 334 IPR001611 GO:0005515
Amo11g1061 528 Pfam Leucine rich repeat 347 403 IPR001611 GO:0005515
Amo11g1061 528 PANTHER PLANT INTRACELLULAR RAS-GROUP-RELATED LRR PROTEIN 5 20 525 - -
Amo11g1061 528 PANTHER LEUCINE-RICH REPEAT-CONTAINING 20 525 - -
Amo11g1061 528 SMART LRR_typ_2 275 297 IPR003591 -
Amo11g1061 528 SMART LRR_typ_2 438 460 IPR003591 -
Amo11g1061 528 SMART LRR_typ_2 252 274 IPR003591 -
Amo11g1061 528 SMART LRR_typ_2 321 344 IPR003591 -
Amo11g1061 528 SMART LRR_typ_2 367 389 IPR003591 -
Amo11g1061 528 SMART LRR_typ_2 229 251 IPR003591 -
Amo11g1061 528 SMART LRR_typ_2 390 413 IPR003591 -
Amo11g1061 528 SMART LRR_typ_2 298 320 IPR003591 -
Amo11g1061 528 SMART LRR_typ_2 345 366 IPR003591 -
Amo11g1061 528 Coils Coil 38 58 - -
Amo11g1061 528 ProSiteProfiles Leucine-rich repeat profile. 392 413 IPR001611 GO:0005515
Amo11g1061 528 SMART LRR_bac_2 275 294 - -
Amo11g1061 528 SMART LRR_bac_2 298 317 - -
Amo11g1061 528 SMART LRR_bac_2 367 386 - -
Amo11g1061 528 SMART LRR_bac_2 252 271 - -
Amo11g1061 528 SMART LRR_bac_2 413 434 - -
Amo11g1061 528 SMART LRR_bac_2 321 340 - -
Amo11g1061 528 SMART LRR_bac_2 438 457 - -
Amo11g1061 528 SMART LRR_bac_2 390 409 - -
Amo11g1061 528 SMART LRR_bac_2 344 363 - -
Amo11g1061 528 SMART LRR_bac_2 229 248 - -
Amo11g1061 528 SUPERFAMILY L domain-like 222 475 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g1061 Amo-Chr11 31315571 31318071 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g1061 222 453 Receptor kinase-like Gene Family AT3G11080 34.034 2.02e-24 105
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g2839 17 130396177 130397526 Amo11g1061 11 31315571 31318071 ECH
Amo11g1061 11 31315571 31318071 Amo11g1061 11 31315571 31318071 ECH