Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g3038 AAGAACTTCACACTTTGCAAGTTTGCATCACAAAAACATCATCATAGTAGTAACATCAAACACAACTACAAAAGATTAATGAGTGGTGCTGGGAACATGTCTGATAATAAGGATCCGGGTATCATGCTCTTTGGCATGAAGATTCCTTTGCCGGAGTTTCAGATTCCAGCCAGCTCTCAAATGGGTTGTCAAATTCAGGCAAACTTTGCAGCCATGAATTCTTGCAGCAACCTGAAGAAGACAGAAGTAGAAACTCACTCTGCTCAAAACTCTGAGCAAGAAAAGAATACTTGCGGATCAAGCTACAGCAAACAAGAATCCAAGAACACTGAGGAAGGAAATGAGGAGTGTAGTAACACAGATCAAGAAAGAAGTTTCAAGAAGCCAGAAAAGATTCTTCAGTGTCCACGCTGCAACAGTTTAGAGACTAAGTTTTGTTATTTCAACAACTACAATGTCAATCAACCGCGGCACTTCTGCAAGAACTGTCAAAGATATTGGACTGCTGGTGGAACGATGAGGAATGTTCCGGTTGGAGCCGGAAGGCGGAAGAATAAGCATCTGGCCTCTCAATTCAGACACATAATAGTATCGGAGGGAACTCCGGCCGCAAGGTTAGAACCAAGAGAAGATTCATCTGGTAACAATGGTTCTGTATTGAAATTTGGTCCAGATGTTCCTCTCTGTGAATCCATGGAGTCAATGCTTAGTCTTCGAGATCAGAAGCCAAATGTTGATGCAGCAAGCTCAGCGAATTCTTATTTTCAAAATGAATCGTTAGAACAAAAGTGTTACCCTGTTCCTCCATGGATATTTTCTTGGAATCCAGGTTGGAATAATGGTGGTTCTCCGGTGAGTTTGACTTTTCCGGCAACAATGAGGGGAGTTCCAACCATTTCGCCACCGAATATTCCGTTGCAATTTGTTCCTGGAATTTCAATAGGATCCAACGGTTGTCTTTCACCCTCTTCCTCTACTACAAGTAACAGTTGCTGCTCCGGCAATGGCTCTCCGACGCTCGGAAAACACACCAGAGATYGTAATGTCTTWATMGACGACGAGAAATCGGAGATATGTGTTTTGGTTCCAAAGACACTTAGAATTGATGGCCCAAATGAGGCTTCAAGAAAGCACTTGTATGAATCAGAAAATGGTGTTTCGAAAAAGGTGGAACAAAAAGGACAAGGCAAAGAGCGTGTATTAGGTGTGTCTCAAATCTTGGAAGCTAACCCTGCAGCAGTTTCTCGTGTTCATGCATTTCAAGAGAGCACACAATGA 1278 0.4249 KNFTLCKFASQKHHHSSNIKHNYKRLMSGAGNMSDNKDPGIMLFGMKIPLPEFQIPASSQMGCQIQANFAAMNSCSNLKKTEVETHSAQNSEQEKNTCGSSYSKQESKNTEEGNEECSNTDQERSFKKPEKILQCPRCNSLETKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKHLASQFRHIIVSEGTPAARLEPREDSSGNNGSVLKFGPDVPLCESMESMLSLRDQKPNVDAASSANSYFQNESLEQKCYPVPPWIFSWNPGWNNGGSPVSLTFPATMRGVPTISPPNIPLQFVPGISIGSNGCLSPSSSTTSNSCCSGNGSPTLGKHTRDXNVXIDDEKSEICVLVPKTLRIDGPNEASRKHLYESENGVSKKVEQKGQGKERVLGVSQILEANPAAVSRVHAFQESTQ* 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g3038 425 MobiDBLite consensus disorder prediction 86 107 - -
Amo10g3038 425 Pfam Dof domain, zinc finger 131 187 IPR003851 GO:0003677|GO:0006355
Amo10g3038 425 ProSiteProfiles Zinc finger Dof-type profile. 133 187 IPR003851 GO:0003677|GO:0006355
Amo10g3038 425 PANTHER CYCLIC DOF FACTOR 2 33 423 IPR045174 GO:0003700|GO:0006355
Amo10g3038 425 MobiDBLite consensus disorder prediction 108 122 - -
Amo10g3038 425 PANTHER CYCLIC DOF FACTOR 3-LIKE 33 423 - -
Amo10g3038 425 MobiDBLite consensus disorder prediction 86 122 - -
Amo10g3038 425 ProSitePatterns Zinc finger Dof-type signature. 135 171 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g3038 Amo-Chr10 96088291 96090818 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g3038 38 424 C2C2-Dof Transcription Factor Family AT5G39660 36.134 2.29e-68 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Amo10g3038 zf-Dof 4.4e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g3038 - - aip:107621760 749.969