Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g2967 AAGAACTTCACACTTTGCAAGTTTGCATCACAAAAACATCATCATAGTAGTAACATCAAACAAAACTACAAAAGATTAATGAGTGGTGCTGGGAACATGTCTGATAATAAGGATCCGGGTATCATGCTCTTTGGCATGAAGATTCCTTTGCCGGAGTTTCAGATTCCAGCCAGCTCTCAAATGGGTTGTCAAATTCAGGCAAACTTTGCAGCCATGAGTTCTTGCAGCAGCCTGAAGAAGAAAGAAGTAGAAACTCAGTCTGCTCAAAACTCTGAGCAAGAAAAGAATACTTGCGGATCAAGCTACAGCAAACAAGAATCCAAGAACACTGAGGAAGGAAATGAGGAGAGTAGTAACACAGATCAAGAAAGAAGTTTCAAGAAGCCAGAAAAGATTCTTCAGTGTCCACGCTGCAACAGTTTGGAGACAAAGTTTTGTTATTTCAACAACTACAACGTCAATCAACCGCGGCACTTCTGCAAGAACTGTCAAAGATATTGGACTGCTGGTGGTACGATGAGGAATGTTCCGGTGGGAGCCGGAAGGCGGAAGAATAAGCACCTGGCCTCTCAATTCCAGCACATAATAGTATCCGAGGGAACTCCGGCCGCAAGGTTAGAACCAAAAGAAGATTCATCTGGTAACAATGGTTCTGTGTTGAAATTTGGTCCAGATGTTCCTCTCTGTGAATCCATGGAGTCAATGCTTAGTCTTCGAGATCAGAAGGCAAATGTTGATGCAGCAAGCTCATCGAATTCTTATTTTCAAAATGAATCGTTAGAACGAAAGTGTTACCCTGTTCCTCCATGGATATTTTCTTGGAATCCAGGTTGGAATAATGGTGGTTCTCCGGTGCCTTTGACTTTTCCGGCAACAATGAGGGGAGTTCCAACCATTTCGCCACCGAATATTCCGTTGCAATTTGTTCCTGGAAGTTTCTGGAACAGAGCACAAGTGTGGCCTTTACAAACCGCCGCAGTTTCAATAGGATCCAACGGTTGTCTTTCACCCTCTTCCTCTACTACAAGTAACAGTTGCTGCTCCGGCAATGGCTCTCCGACGCTCGGAAAACACACCAGAGATGTAATGTCTTATGACGACGAGAAATCGGAGATATGTGTTTTGGTTCCAAAGACACTTAGAATTGATGGCCCAAATGAGGCTTCAAGAAAGCACTTGTATGAATCAGAAAATGGTGTTTCTAAAAAGGTGGAACAAAAAGGACAAGACAAAGAGCGTGTATTAGGTGTGTCTCAAATCTTGGAAGCTAACCCTGCAGCAATTTCTCGTGTTCATGCATTTCAAGAGAGCACACAATGA 1320 0.4318 KNFTLCKFASQKHHHSSNIKQNYKRLMSGAGNMSDNKDPGIMLFGMKIPLPEFQIPASSQMGCQIQANFAAMSSCSSLKKKEVETQSAQNSEQEKNTCGSSYSKQESKNTEEGNEESSNTDQERSFKKPEKILQCPRCNSLETKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKHLASQFQHIIVSEGTPAARLEPKEDSSGNNGSVLKFGPDVPLCESMESMLSLRDQKANVDAASSSNSYFQNESLERKCYPVPPWIFSWNPGWNNGGSPVPLTFPATMRGVPTISPPNIPLQFVPGSFWNRAQVWPLQTAAVSIGSNGCLSPSSSTTSNSCCSGNGSPTLGKHTRDVMSYDDEKSEICVLVPKTLRIDGPNEASRKHLYESENGVSKKVEQKGQDKERVLGVSQILEANPAAISRVHAFQESTQ* 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g2967 439 MobiDBLite consensus disorder prediction 86 107 - -
Amo10g2967 439 MobiDBLite consensus disorder prediction 86 128 - -
Amo10g2967 439 ProSiteProfiles Zinc finger Dof-type profile. 133 187 IPR003851 GO:0003677|GO:0006355
Amo10g2967 439 Pfam Dof domain, zinc finger 131 187 IPR003851 GO:0003677|GO:0006355
Amo10g2967 439 PANTHER CYCLIC DOF FACTOR 2 33 437 IPR045174 GO:0003700|GO:0006355
Amo10g2967 439 PANTHER CYCLIC DOF FACTOR 3-LIKE 33 437 - -
Amo10g2967 439 MobiDBLite consensus disorder prediction 108 128 - -
Amo10g2967 439 ProSitePatterns Zinc finger Dof-type signature. 135 171 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g2967 Amo-Chr10 95281084 95283566 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g2967 38 438 C2C2-Dof Transcription Factor Family AT5G39660 34.292 8.63e-65 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Amo10g2967 zf-Dof 4.7e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g2967 - - aip:107621760 792.341