Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g2541 ATGCAAGACTCACCTTCCACCGCCCCCGCTGGTGGCAGGTTTTTCGGCGGAGGAGTCGGAGACAGGAGGCTCAGGCCTCACAACCAGCACCAGGAACCGTTGAAGTGCCCTCGCTGTGATTCGCTCAACACTAAGTTCTGCTATTACAACAACTACAACCTCTCTCAGCCGCGCCACTTCTGCAAGAACTGTCGCCGCTACTGGACCAACGGCGGCGTCCTCCGTAACGTCCCCGTCGGCGGAGGTTGTCGGAAATCCAAATCCAAGCGCTCCAACGCGAAGTCCAAGAAAAGCAACAACAACAACTGCTCCTCCTCTTTGGAAGCCGCTCCGGAAACAACAACACCGCAACCGCAATTGCCGGAGGGAAATTCGAACTCGAACTCGAACTCTGGCAGCGAAAGCTCCAGCCTCACCGCCATCGCCACTAGCTCCGCCGCCACGGAGGCGGTGTCTGCAGCGACGTCAAACGCTGCGTTGAGCAAGAATCCGGTCCCCGACGAGAACGTGAATAGCTCTAACTTCACTGGTGGCGGTGGTTATTACGGTGGCTTCTCTGACATAGGAACATTCACGAGCCTTATGAGTTCAGCAAACGAAACGATGTCGTTTGGTTTTGAAAACAATGTTAACGTTCTCGATGCGACGTTGTTTCGTTTCGGTAATGATGATGGCGAGTGGCTGCAGCAGAAAGTTATCGGAAATGGAAGCGACGATCAGCGTAATAATAATAATAATAATAATCAGGAGTTTGCATCGGAGCCGTTGATGCTGGATCAGACGGGTCCTGTTGAGTTGTCGTCGCTGCAGAATGGGAAAGTTGGCAACGGAGGATGTGGACCGTTGGATTGGCATGCAGCTGGTGGTGATGGTTCGGATCATGATCATGATTTGTTTGATCTTACTAGCGCCGTTGATCAGAGTTACTGGACCCACACTCACTGGTCTGATCAAGATAACAATCCAAATCTCTTTCATCTTCCTTGA 987 0.5218 MQDSPSTAPAGGRFFGGGVGDRRLRPHNQHQEPLKCPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRYWTNGGVLRNVPVGGGCRKSKSKRSNAKSKKSNNNNCSSSLEAAPETTTPQPQLPEGNSNSNSNSGSESSSLTAIATSSAATEAVSAATSNAALSKNPVPDENVNSSNFTGGGGYYGGFSDIGTFTSLMSSANETMSFGFENNVNVLDATLFRFGNDDGEWLQQKVIGNGSDDQRNNNNNNNQEFASEPLMLDQTGPVELSSLQNGKVGNGGCGPLDWHAAGGDGSDHDHDLFDLTSAVDQSYWTHTHWSDQDNNPNLFHLP* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g2541 328 PANTHER DOF ZINC FINGER PROTEIN 4 17 314 - -
Amo10g2541 328 MobiDBLite consensus disorder prediction 1 35 - -
Amo10g2541 328 MobiDBLite consensus disorder prediction 95 141 - -
Amo10g2541 328 Pfam Dof domain, zinc finger 32 88 IPR003851 GO:0003677|GO:0006355
Amo10g2541 328 MobiDBLite consensus disorder prediction 78 141 - -
Amo10g2541 328 ProSiteProfiles Zinc finger Dof-type profile. 34 88 IPR003851 GO:0003677|GO:0006355
Amo10g2541 328 ProSitePatterns Zinc finger Dof-type signature. 36 72 IPR003851 GO:0003677|GO:0006355
Amo10g2541 328 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 17 314 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g2541 Amo-Chr10 87967973 87969560 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g2541 21 328 C2C2-Dof Transcription Factor Family AT5G60850 39.812 1.84e-51 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Amo10g2541 zf-Dof 5.9e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g2541 - - gmx:778116 265.388
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo11g2429 11 128928038 128930494 Amo10g2541 10 87967973 87969560 PCT
Amo10g2541 10 87967973 87969560 Amo11g2429 11 128928038 128930494 PCT