Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g0242 ATGGGTTTGAGTTCTAAGCAGGTTTCAAGTACAGGACTTGATTGGAACAAGGCCTTGTTGCAATCATCACAAAACTTGGAGCTACCATCAAAGATTACTACTATGAAGAAACAACAACAACAAATTCAGAAGCAGCAACCAATATTAGAGCCTCTGAGGTGTCCAAGATGTGATTCAACAAACACAAAGTTTTGTTACTACAACAATTACAACAAGTCTCAGCCTCGCCATTTCTGTAGAGCTTGCAAGAGGCACTGGACTAAAGGTGGAACTCTCCGCAATGTTCCTGTTGGAGGTGGAAGAAAGAATAAGAGACCAACCAAGAAATCAACAACCACTACTTCTATTAGCACCACCACCACTACCACTGTTACCACCTTAAATGGTGGTGGTGGAAAAATGGAAGTTCAACCTCAGAGTAATCGTCCTCTTCCTCCTCCTCCTCCTACTCTTTACCAATCTATGATTCGTCCACCACCTTTGCTACCACAACAGAATAATAATAATAATCTATCAGAAGTTAAGGACTTTGGTGGTAGTGGAATGTTTCTGAGTTCATCATCATCAGCTTTGAATCTTCCTCAGAGTCAAAGTCTAACCTTTCCCTTCTCAACAGCATCAAGTTCTAGTTTTGATGCAAACCCATGTTCAGTTTCAGCCTCCAATATTTATAGCTATGGTGGAGAAGAGTTTAAGACAATGGAGGAGACAACCATCAATGGTACTAACACACACCTATGGGAGATTCCATTACCTGCTACAACAACAAGTGTTGCTATGGAAATGCCTTCAAATTATTGGGGTTGGGAGGACCTTGATCCTTTGGTCTCAACTGATCTAAATGTTCCTTGGGATGATTCTGATATCAAACCTTGA 876 0.4098 MGLSSKQVSSTGLDWNKALLQSSQNLELPSKITTMKKQQQQIQKQQPILEPLRCPRCDSTNTKFCYYNNYNKSQPRHFCRACKRHWTKGGTLRNVPVGGGRKNKRPTKKSTTTTSISTTTTTTVTTLNGGGGKMEVQPQSNRPLPPPPPTLYQSMIRPPPLLPQQNNNNNLSEVKDFGGSGMFLSSSSSALNLPQSQSLTFPFSTASSSSFDANPCSVSASNIYSYGGEEFKTMEETTINGTNTHLWEIPLPATTTSVAMEMPSNYWGWEDLDPLVSTDLNVPWDDSDIKP* 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g0242 291 MobiDBLite consensus disorder prediction 93 144 - -
Amo10g0242 291 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 36 219 IPR045174 GO:0003700|GO:0006355
Amo10g0242 291 Pfam Dof domain, zinc finger 52 104 IPR003851 GO:0003677|GO:0006355
Amo10g0242 291 ProSitePatterns Zinc finger Dof-type signature. 54 90 IPR003851 GO:0003677|GO:0006355
Amo10g0242 291 PANTHER OS06G0284500 PROTEIN 36 219 - -
Amo10g0242 291 ProSiteProfiles Zinc finger Dof-type profile. 52 106 IPR003851 GO:0003677|GO:0006355
Amo10g0242 291 MobiDBLite consensus disorder prediction 109 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g0242 Amo-Chr10 2487509 2489250 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g0242 14 119 C2C2-Dof Transcription Factor Family AT5G60200 52.212 1.00e-30 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Amo10g0242 zf-Dof 4.8e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g0242 - - gmx:100791855 257.684
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g4056 13 133519060 133520954 Amo10g0242 10 2487509 2489250 PCT
Amo10g0242 10 2487509 2489250 Amo13g4056 13 133519060 133520954 PCT