Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g1741 ATGGACACAGCTCAGTGGCCACAGGAGATTGTGGTGAAGCCAATAGAAGAGATAGTTGTGGGAACAAACACATCATCATGTCATCAATCAAAACCACCATCTTCTAATAATCTTGCATCAGAGAATAATAACAACAACAATACCATCAAGAAACCAAGGCCACAGAAAGAGCAAGCCCTAAACTGTCCAAGGTGCCATTCAACAAACACAAAGTTCTGTTACTACAACAACTACAGCCTTACACAACCAAGGTACTTCTGCAAGACTTGTAGAAGGTACTGGACTGAAGGTGGGTCCCTTAGGAACATCCCTGTTGGTGGTGGATCCAGAAAGAACAAGAGATCTTCTACTTCAATATCATCATCACCGTCACCGCCTTCACCCAACAAGAACATTAAGCTTATTGGTAAGGTAGTCCATGAAGGCCAAGATCTGAACTTGGCTTTTCCGTCTGATTTGGTTGTTCATCAACAAAACAATAATACTCTTTCTTCTTCTTCTTCTTCTTCAACTATTACTAGTACTGTTACTACTACTACTACTACACCACCCTCTTCTACTACCCAATTCTCAGCAATGGAGCTTCTTACTGGGATCACTTCAGCAAATTCAAGAGGGGGTTTGGGTTTGAACTCTTTCTTGCCTCATCATCCACCTGATCCAAACACAGTGCTGTACAATAATAGTACTTTTGCTCTTCAGGATTTCAATAAGACAGCAGGATTGAATTTCTCTTTGGATGGGATTGGGATTGGGATTGTAGGGAGTGGATTTGCAGGCCTTCATCATCATCAACAAGATCAGACAAGTGGTGGTGGGAATAATAATGGGAGGCTTTTGTTTCCATTTGAGGATTTGAAACAGGTTTCTAACGCCGACGCAATTGATAATCAGAGTAACAGCAAGGTGCATCAACAACAAGGGGATTCAAGTGGATATTGGAGTGGGATGTTAGGTGGAGGATCATGGTAA 972 0.4187 MDTAQWPQEIVVKPIEEIVVGTNTSSCHQSKPPSSNNLASENNNNNNTIKKPRPQKEQALNCPRCHSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGGSRKNKRSSTSISSSPSPPSPNKNIKLIGKVVHEGQDLNLAFPSDLVVHQQNNNTLSSSSSSSTITSTVTTTTTTPPSSTTQFSAMELLTGITSANSRGGLGLNSFLPHHPPDPNTVLYNNSTFALQDFNKTAGLNFSLDGIGIGIVGSGFAGLHHHQQDQTSGGGNNNGRLLFPFEDLKQVSNADAIDNQSNSKVHQQQGDSSGYWSGMLGGGSW* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g1741 323 MobiDBLite consensus disorder prediction 160 188 - -
Amo09g1741 323 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 160 320 IPR045174 GO:0003700|GO:0006355
Amo09g1741 323 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 1 140 IPR045174 GO:0003700|GO:0006355
Amo09g1741 323 MobiDBLite consensus disorder prediction 297 323 - -
Amo09g1741 323 MobiDBLite consensus disorder prediction 23 58 - -
Amo09g1741 323 ProSiteProfiles Zinc finger Dof-type profile. 60 114 IPR003851 GO:0003677|GO:0006355
Amo09g1741 323 MobiDBLite consensus disorder prediction 297 313 - -
Amo09g1741 323 Pfam Dof domain, zinc finger 58 114 IPR003851 GO:0003677|GO:0006355
Amo09g1741 323 MobiDBLite consensus disorder prediction 23 54 - -
Amo09g1741 323 MobiDBLite consensus disorder prediction 101 131 - -
Amo09g1741 323 PANTHER DOF ZINC FINGER PROTEIN DOF4.6-LIKE 160 320 - -
Amo09g1741 323 MobiDBLite consensus disorder prediction 109 129 - -
Amo09g1741 323 PANTHER DOF ZINC FINGER PROTEIN DOF4.6-LIKE 1 140 - -
Amo09g1741 323 ProSitePatterns Zinc finger Dof-type signature. 62 98 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g1741 Amo-Chr9 70435997 70438313 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo09g1741 1 323 C2C2-Dof Transcription Factor Family AT4G24060 40.000 4.21e-61 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Amo09g1741 zf-Dof 4.7e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g1741 - - adu:107465965 559.296