Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g0244 ATGCAAGATCCAACAACAGTATTCCAAATCCAACAAGCCTTGTTGAAACAACCACACTTCCCAGAACAAGAACAACAACTAAAGTGTCCAAGGTGTGAATCCACAAACACCAAGTTCTGTTACTACAACAACTACAACCTCTCTCAGCCACGCCATTACTGCAAGAATTGCAGAAGGTATTGGACCAAAGGTGGCGCCTTGAGGAACATACCCGTTGGTGGTGGAACCAGAAAGACCCACAAACGTTCTTCTTCATCTTCTTCATCTTCCACTTCAAATTCATCCATCAAACGCCCTTCATCATCATCATCATCACAACAAGCCAATTCTATTACTACTAATAGTAATAATAGCGTTATTTGTTCCGGGTCTGATTCGACCCGGACTTGCACCGACCCGGTTGGTCAAGATCAGAGGGTGTTGAACATTGGTGGTAGCTTTAGTTCACTATTGGGAACAGATGGACCTTTTGGGGGGATTTTAGAGGGTGTAAATTCAAATGGGTCAGAGCTGAAAATTGGTGAATTTGGTGGTGGGATTGGGAATGTGGGTTCTGGATTGGTCGCGAATCCGAATTCAGGTCGAAACCCGGGTTTGGATATTCAGAATAATGGTGATTCAAGCTATTGGAATAATGGTGGTGGTCATGGTTGGTCTGATCTTGCAATATACACACCTGGGTCAAGCTTTCAGTAG 696 0.4397 MQDPTTVFQIQQALLKQPHFPEQEQQLKCPRCESTNTKFCYYNNYNLSQPRHYCKNCRRYWTKGGALRNIPVGGGTRKTHKRSSSSSSSSTSNSSIKRPSSSSSSQQANSITTNSNNSVICSGSDSTRTCTDPVGQDQRVLNIGGSFSSLLGTDGPFGGILEGVNSNGSELKIGEFGGGIGNVGSGLVANPNSGRNPGLDIQNNGDSSYWNNGGGHGWSDLAIYTPGSSFQ* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g0244 231 ProSiteProfiles Zinc finger Dof-type profile. 27 81 IPR003851 GO:0003677|GO:0006355
Amo09g0244 231 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 17 230 IPR045174 GO:0003700|GO:0006355
Amo09g0244 231 MobiDBLite consensus disorder prediction 78 118 - -
Amo09g0244 231 MobiDBLite consensus disorder prediction 68 118 - -
Amo09g0244 231 PANTHER DOF ZINC FINGER PROTEIN DOF1.7 17 230 - -
Amo09g0244 231 Pfam Dof domain, zinc finger 25 81 IPR003851 GO:0003677|GO:0006355
Amo09g0244 231 ProSitePatterns Zinc finger Dof-type signature. 29 65 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g0244 Amo-Chr9 2795840 2797827 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo09g0244 1 161 C2C2-Dof Transcription Factor Family AT1G51700 50.581 3.78e-45 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Amo09g0244 zf-Dof 1.5e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g0244 - - aip:107619380 319.701
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g0257 18 3623929 3626387 Amo09g0244 09 2795840 2797827 hybridization
Amo18g0257 18 3623929 3626387 Amo09g0244 09 2795840 2797827 PCT
Amo09g0244 09 2795840 2797827 Amo09g0244 09 2795840 2797827 PCT
Amo09g0244 09 2795840 2797827 Amo18g0257 18 3623929 3626387 PCT