Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g1311 ATGGGAATGAAGAGCACTGGGGGAGAGATTGTTCAAGTCCAAGGTGGKCACATTGTTCGATCCACCGGCCGGAAAGATCGACACAGCAAGGTTTACACGGCGAAAGGGCCGCGTGACCGTCGAGTTAGGCTCTCGGCACACACTGCAATCCAATTCTATGATGTCCAAGACAGGCTTGGYTATGACAGGCCAAGCAAGGCAGTGGACTGGCTTATCAAGAAGGCCAAAGCAGCCATCGACAAACTCGCCGAGCTCCCTCCTTGGGAGCCTACTCCTCCTCCTCCCACTACCAATGAGGTGGAGGAGGAGCAGAATGGAGGATCAACTGACATGGCAATTGCAGAACAGTCAGAGTCTTCTGGTTACAATTTTCAGCTTCAAAGGCAACTTGGTGAAGACCCTGAAAACCAACACCACCACTCAGCATTCATTCCTTCACCTATTGACACTGATGGTGGCATAGCATTTTTCCCAACAACGTCTGCTGCTTCCTCCATCAATTTCCAGAGCTACCCTCCTGAGATAATCTCAAGGACCAACAACTCCTCAGAGGATCTTGGACTTTCCCTTCATTCTTTCCAAGATTCTGGCCTAATTCATCATCATGGACAGTCACAACAAGGAGGTGGTGCAGATCATCAAAACCCTTCTTCAAATGACCAAACTCTCTTTGCTAACTACCAGAGAATGGTGGCCTGGAACAGTGATGCCGGAGGCACGCAAGCCGACATGAACCGTTCCGGTTTCATGGTGAATTCACCTGGTTTTTCTTCTGCTTTTTCTCATCATCAACAAAGGGGTACCCTTCAGTCCAGTTTCTCACCATCACTTCGCCCTTGGAGTGAGATTCCTCAAATGGCTTCTTCTAACGAGCATCACCACAACCACAAGTCTCAGCCAATCCAGCAGCAACACCAAGCTTCAATCTTTGGAAGCCGGTTCCTCTCTGATGCATTGCCAGGGTTCTGCATTCCTGCTAGGATTCAAGGTGAAGATGAGAGCCATGGTGTTGGTTCTGACAGGCCTTCATCTTCTGCTTCTCCTAATTCACATCACTGA 1059 0.492 MGMKSTGGEIVQVQGGHIVRSTGRKDRHSKVYTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKAAIDKLAELPPWEPTPPPPTTNEVEEEQNGGSTDMAIAEQSESSGYNFQLQRQLGEDPENQHHHSAFIPSPIDTDGGIAFFPTTSAASSINFQSYPPEIISRTNNSSEDLGLSLHSFQDSGLIHHHGQSQQGGGADHQNPSSNDQTLFANYQRMVAWNSDAGGTQADMNRSGFMVNSPGFSSAFSHHQQRGTLQSSFSPSLRPWSEIPQMASSNEHHHNHKSQPIQQQHQASIFGSRFLSDALPGFCIPARIQGEDESHGVGSDRPSSSASPNSHH* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g1311 352 MobiDBLite consensus disorder prediction 199 220 - -
Amo08g1311 352 MobiDBLite consensus disorder prediction 1 30 - -
Amo08g1311 352 MobiDBLite consensus disorder prediction 327 352 - -
Amo08g1311 352 MobiDBLite consensus disorder prediction 260 281 - -
Amo08g1311 352 ProSiteProfiles TCP domain profile. 24 82 IPR017887 -
Amo08g1311 352 Pfam TCP family transcription factor 23 124 IPR017887 -
Amo08g1311 352 MobiDBLite consensus disorder prediction 85 107 - -
Amo08g1311 352 PANTHER TRANSCRIPTION FACTOR TCP4 2 352 - -
Amo08g1311 352 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 2 352 IPR005333 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g1311 Amo-Chr8 21318711 21321629 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g1311 8 351 TCP Transcription Factor Family AT3G15030 42.432 3.49e-67 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Amo08g1311 TCP 2.5e-32 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g1034 18 16900277 16903150 Amo08g1311 08 21318711 21321629 hybridization
Amo13g2302 13 39589163 39591215 Amo08g1311 08 21318711 21321629 PCT
Amo03g0175 03 3356303 3359726 Amo08g1311 08 21318711 21321629 PCT