Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g0793 ATGGAAACGGATATTCCGGTGGCCAATTACACTTACATGGGCAGGACTTTCACTCAACTCGCCCTCGGTGACCATTCCTCTTCTGCTTTCAGCGACTGCAACAGCGACAGATCTGGCGAGTTCTCCACCACTTCCTCACAAGCTCGCCGCCTCTTTATTGCCTGCACCGCCGACAACTCCCACGACCTCATCACCCACCTCGTCACCGAACTCCAATCCTCTTCCATCGAAGACCAAAAACAAGCTGCCATGGAGATCAGACTTCTCGCCAAGAACAAGCCCGAAAACCGCCTCAAGATCGCCAAAGCTGGCGCCATCAAACCTTTAATCTCCCTCATTTCATCTCAGGACCTTCAGCTTCAGGAATACGGCGTCACCGCCATTCTCAACCTCTCCCTCTGCGATGACAATAAAGACGCCATCGCTTCTTCCGGAGCGATTAAGCCCCTTGTTCGTGCACTCAAGACGGGTACTCCAGCGGCCAAAGAGAACGCCGCCTGCGCTCTCCTTCGTCTCTCGCAGGTGGAAGAGAACAAGCCGGCGATAGGGAAGTGCGGGGCGATTCCGCCGCTGGTAAGCCTTCTAGAAAGCGGCGGTTTACGAGCCAAAAAGGATGCGTCCACGGCGCTGTACTCGCTGTGCTCGTCAGTAAAGGAGAACAAGATCAAGGCAGTCAAGGCGGGGATCATGAAAGTGCTGGTGGAGCTCATGGCAGACTTCGGTGGGAATATGGTAGACAAGTCAGCTTATGTGGCAAGCGTTTTGGTTTCGGTAATGGAGGCAAGGGCAACTCTGGTGGAGGAAGGAGGGATACCTGTGCTAGTGGAGATGGTGGAGGTTGGGACGCAAAGGCAGAAGGAAATAGCGGCGGTTATTCTGTTACAGGTGTGCCAAGACTGCGTGATTTACCGTACGATGGTGGCGCGCGAAGGTGCGATTCCTCCTCTGGTTGCTCTGTCGCAGAACGGCACCAACCGCGCCAAGCAAAAGGCGGAGACACTGATAGAACTTCTACGGCAACCAAGATCCGGCAACGGCGCTGCTCCTCCTACATCATAA 1059 0.5477 METDIPVANYTYMGRTFTQLALGDHSSSAFSDCNSDRSGEFSTTSSQARRLFIACTADNSHDLITHLVTELQSSSIEDQKQAAMEIRLLAKNKPENRLKIAKAGAIKPLISLISSQDLQLQEYGVTAILNLSLCDDNKDAIASSGAIKPLVRALKTGTPAAKENAACALLRLSQVEENKPAIGKCGAIPPLVSLLESGGLRAKKDASTALYSLCSSVKENKIKAVKAGIMKVLVELMADFGGNMVDKSAYVASVLVSVMEARATLVEEGGIPVLVEMVEVGTQRQKEIAAVILLQVCQDCVIYRTMVAREGAIPPLVALSQNGTNRAKQKAETLIELLRQPRSGNGAAPPTS* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g0793 352 Gene3D - 41 177 IPR011989 -
Amo08g0793 352 Gene3D - 253 340 IPR011989 -
Amo08g0793 352 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 104 146 IPR000225 GO:0005515
Amo08g0793 352 SUPERFAMILY ARM repeat 60 335 IPR016024 -
Amo08g0793 352 Gene3D - 178 252 IPR011989 -
Amo08g0793 352 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 4-LIKE ISOFORM X1 1 347 - -
Amo08g0793 352 PANTHER U BOX DOMAIN-CONTAINING 1 347 - -
Amo08g0793 352 SMART arm_5 134 174 IPR000225 GO:0005515
Amo08g0793 352 SMART arm_5 257 298 IPR000225 GO:0005515
Amo08g0793 352 SMART arm_5 300 340 IPR000225 GO:0005515
Amo08g0793 352 SMART arm_5 93 133 IPR000225 GO:0005515
Amo08g0793 352 SMART arm_5 175 215 IPR000225 GO:0005515
Amo08g0793 352 Pfam Armadillo/beta-catenin-like repeat 177 215 IPR000225 GO:0005515
Amo08g0793 352 Pfam Armadillo/beta-catenin-like repeat 135 173 IPR000225 GO:0005515
Amo08g0793 352 Pfam Armadillo/beta-catenin-like repeat 94 132 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g0793 Amo-Chr8 14070379 14072525 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g0793 28 345 U-box Gene Family AT2G23140 46.646 4.12e-81 258
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo08g0793 08 14070379 14072525 Amo17g2872 17 130778601 130781052 hybridization
Amo16g3812 16 149843299 149846315 Amo08g0793 08 14070379 14072525 PCT
Amo08g0793 08 14070379 14072525 Amo16g3812 16 149843299 149846315 PCT