Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g0423 ATGGACACAGCTCAGTGGGCACAGGGAATAGGAGTGGTAAAAGCAATGGAAGGTTCGTCAACAAAAGCGTGTTCTTCATCTTCGGTGTTAGAGAGAAGAGCAAGGCCAGTGAAGGATCAAGCACTTAACTGTCCACGGTGCAACTCAACCAACACAAAATTCTGTTACTACAACAACTACAGCCTCTCTCAGCCACGCTACTTCTGCAAAACTTGCAGAAGGTATTGGACTGAAGGTGGTTCCTTGAGAAACGTTCCCGTTGGCGGCGGTTCCAGAAAGAACAAGAGATCCTCCTCCACTCCTGCTTCATCACCATCATCATCTTTAACTAATAAGAACCCAAAGATCATCCATCAAGGACAAGATCTTAACTTAGCATATCCACCACCACCACCACCACCTCCTCATCATCATGACGATTCTGCTACGGAGTTTCTGAGAAGTGGGATCAATACTACTACTACTTCAAGGGGATTGAATTCTTTTATGCCGATGTCGCTTTCGGATTCTACGATGTATAGTACGGCAGGGTTTGGTGCTCCAATGCAAGAGTTCATCAAATCTGGTGGGCTTAACTTTAGTCTTGAAGAAGGGTTTGAGAGTGGTGGTGGTGGTGCAAGGGTTTTGTTTCCTTCTTCAGAGGAAAAGAATACCAATAGAACTGATTCAACTACTGCTGGCTTTTGGAATGGCATGCTAGGTGGAGCTTCATGGTAG 717 0.4547 MDTAQWAQGIGVVKAMEGSSTKACSSSSVLERRARPVKDQALNCPRCNSTNTKFCYYNNYSLSQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSSSTPASSPSSSLTNKNPKIIHQGQDLNLAYPPPPPPPPHHHDDSATEFLRSGINTTTTSRGLNSFMPMSLSDSTMYSTAGFGAPMQEFIKSGGLNFSLEEGFESGGGGARVLFPSSEEKNTNRTDSTTAGFWNGMLGGASW* 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g0423 238 ProSitePatterns Zinc finger Dof-type signature. 44 80 IPR003851 GO:0003677|GO:0006355
Amo08g0423 238 ProSiteProfiles Zinc finger Dof-type profile. 42 96 IPR003851 GO:0003677|GO:0006355
Amo08g0423 238 Pfam Dof domain, zinc finger 39 96 IPR003851 GO:0003677|GO:0006355
Amo08g0423 238 MobiDBLite consensus disorder prediction 91 118 - -
Amo08g0423 238 PANTHER DOF ZINC FINGER PROTEIN DOF1.8 21 234 - -
Amo08g0423 238 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 21 234 IPR045174 GO:0003700|GO:0006355
Amo08g0423 238 MobiDBLite consensus disorder prediction 83 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g0423 Amo-Chr8 8199679 8201001 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g0423 32 238 C2C2-Dof Transcription Factor Family AT3G61850 43.284 4.71e-51 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Amo08g0423 zf-Dof 8.4e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g0423 - - adu:107460523 456.832
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo08g0423 08 8199679 8201001 Amo17g2457 17 121810004 121811431 hybridization