Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g0368 ATGAAAGCTACTACTCCTCCTCCTTACACAGCAATGGCAATGCAAATGCAAAGCTTTTCTTCATCCGCATTATTGGCGGAGCCAGACCTCTCCTTAAACATTAGCCCTCCTTTCCTTTCTGCCAAAGGAACATTCAAAGATATGTGCTCCTCAATCTCTGATTCAGGTAGTAGTGGAAGCGATGCAAGCCATGATAATAATAATAATAATAATAATTGCTTCTTTCACCACACCCACACTGTTCCACAACCGACATTGACATTAGGGTCTGGACCTGCATCAAACTTGAATCATCATCATCATTATCATCATCTCCATCAGTATCMAATGCAAGGGCTCTCAAGAAACTACTTCAATCATCATCCTCACCAACCTCAAATCCATTGCCGCTCCGATTTCAAACGAAATGGTGGCGGGAGAAGAAGCATGAGAGCTCCCAGAATGAGATGGACTACCACACTCCATGCTCATTTTGTTCATGCTGTTCAGCTTCTTGGCGGTCATGAAAGGGCAACTCCGAAGTCAGTGTTAGAGTTAATGAATGTTAAGGATCTAACTCTAGCTCACGTCAAGAGTCACTTGCAGATGTATAGAACAGTGAAGAGCACTGACAAAGTCCCAGGTAATAATAATAATAATCTTGGAGATGCGCTAGCTGTTGTATGTAATGGTCACAAGGTAGATATGGGGTTCGAGCAGCAAAGGCAAGAGGTCGTTGTGGATCATCTACATGCTCAGAGAGGCCTTCTCCAACACCCACTGGTGCAATTGCAACAATCCCAAAGGTCATCATGTCAATCACGACTACTAGAGACAAATACAAATATTACTCGACAAAAACCCGATATCAGCTTCGTGTATTCTCGTCTCCAAGATGGCAATGAAATCATGAATAATCACGGAGGGTTGTCGAATTACTTGAAGATGAAGGAGAGGTCGGACTGTAACAATTTGTCGTCAGATTCAGAAGGCGTTATTGATCTGGAATTCACTCTTGGAAGGCCAACACACCATCAGGATGAATCATCAAGAGAGTTAACTCTTCTCAAGTGTTAA 1056 0.4271 MKATTPPPYTAMAMQMQSFSSSALLAEPDLSLNISPPFLSAKGTFKDMCSSISDSGSSGSDASHDNNNNNNNCFFHHTHTVPQPTLTLGSGPASNLNHHHHYHHLHQYXMQGLSRNYFNHHPHQPQIHCRSDFKRNGGGRRSMRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKSTDKVPGNNNNNLGDALAVVCNGHKVDMGFEQQRQEVVVDHLHAQRGLLQHPLVQLQQSQRSSCQSRLLETNTNITRQKPDISFVYSRLQDGNEIMNNHGGLSNYLKMKERSDCNNLSSDSEGVIDLEFTLGRPTHHQDESSRELTLLKC* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g0368 351 MobiDBLite consensus disorder prediction 125 139 - -
Amo08g0368 351 Gene3D - 145 202 - -
Amo08g0368 351 MobiDBLite consensus disorder prediction 116 143 - -
Amo08g0368 351 SUPERFAMILY Homeodomain-like 143 200 IPR009057 -
Amo08g0368 351 MobiDBLite consensus disorder prediction 50 76 - -
Amo08g0368 351 Pfam Myb-like DNA-binding domain 147 198 IPR001005 -
Amo08g0368 351 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 146 199 IPR006447 GO:0003677
Amo08g0368 351 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 23 351 IPR044847 GO:0000976|GO:0006355|GO:0010158
Amo08g0368 351 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 23 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g0368 Amo-Chr8 7213780 7216643 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g0368 28 208 G2-like Transcription Factor Family AT5G42630 57.447 6.89e-43 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Amo08g0368 Myb_DNA-binding 1.6e-05 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo08g0368 08 7213780 7216643 Amo17g2353 17 118848997 118851923 hybridization
Amo16g3910 16 150884425 150890328 Amo08g0368 08 7213780 7216643 PCT
Amo08g0368 08 7213780 7216643 Amo16g3910 16 150884425 150890328 PCT