Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g0149 ATGGCTGGGTTCTTCTCTCTAGGTGGAAGGGGAGCTGGCCCACACAGCAACAAGGAAGAAGAAGGAGAAAGAGTAGCAGAAAAACATCATCAAGACCATCACAACAGCAATAGCCTATTCTTGTTCAGGAACAACGAGGAGGTGTACAACAAAGGAGGATTCGAGATATGGCCGCAGCCCTACCACCAAAACCAAGGTTTCAGCAACTACTACTCGTTTGGGGTGGGTCCTAGTACTCATCAACMTAGAAGGAACMACAACAACAACGACAACTCCAACAACAACTCCAACGACGAAGGCGTCTCCTTCTGTGTCTCGGATGAGTCGACGAGATTYGGACTGACGATGATGAGGTCCTCCGGTGGTGGTGGAGGCACGGGGAGCGGCGGCGGTGGCGGTGGCGTAAACTGCCAGGACTGCGGGAACCAAGCAAAGAAAGACTGTGCTCACCTGAGATGCAGGACTTGTTGTAAGAGCCGAGGGTTTCAGTGCCAAACCCACGTGAAGAGCACTTGGGTTCCYGCCGCAAAACGCCGTGAACGACAGCAACAACTCGCTGCCTTGCAGCAACAGCAATTGCACAGTGCAGACACTTCTTCTAAACGACACAGAGACACTCATCCAGCTCTTGACACTCTTCCTTGCGCTCCTCCTGTTCCCACCATCACCACCACAGAAGTAAGCTCATCAGCGGTGTTTAGGTGTGTGAAAGTTAGCGCAATAGACAGTGTAGATGAACAGTATGCATATCAAACCGCTGTCAACATCGGAGGCCATGTTTTCAAGGGAATTCTCTACGATCAAGGTCCCCAAGGACTTTACACTACTGCCATTGTTGCCGAGGGTTCTTCCGCTGGAGGAGGAGGAGGAGGAGGAGCTGAACCTCAACAACAACTCAGCCTCATAACAGCTGCAACCACCACCGCTGGGAACCCCTTTGACCCTTCTTCGCTTTACCCGGCTCCACTCAACGCTTTCATGGCTGGTACGCAATTCTTCCCACCACCAAAGTCCTAA 1017 0.5182 MAGFFSLGGRGAGPHSNKEEEGERVAEKHHQDHHNSNSLFLFRNNEEVYNKGGFEIWPQPYHQNQGFSNYYSFGVGPSTHQXRRNXNNNDNSNNNSNDEGVSFCVSDESTRFGLTMMRSSGGGGGTGSGGGGGGVNCQDCGNQAKKDCAHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLAALQQQQLHSADTSSKRHRDTHPALDTLPCAPPVPTITTTEVSSSAVFRCVKVSAIDSVDEQYAYQTAVNIGGHVFKGILYDQGPQGLYTTAIVAEGSSAGGGGGGGAEPQQQLSLITAATTTAGNPFDPSSLYPAPLNAFMAGTQFFPPPKS* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g0149 338 MobiDBLite consensus disorder prediction 114 136 - -
Amo08g0149 338 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 226 270 IPR006511 -
Amo08g0149 338 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 136 178 IPR006510 -
Amo08g0149 338 PANTHER PROTEIN SHI RELATED SEQUENCE 7 1 336 - -
Amo08g0149 338 MobiDBLite consensus disorder prediction 189 217 - -
Amo08g0149 338 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 336 IPR007818 GO:0003700|GO:0006355
Amo08g0149 338 Pfam Domain of unknown function (DUF702) 134 271 - -
Amo08g0149 338 MobiDBLite consensus disorder prediction 1 34 - -
Amo08g0149 338 MobiDBLite consensus disorder prediction 72 102 - -
Amo08g0149 338 MobiDBLite consensus disorder prediction 14 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g0149 Amo-Chr8 2658623 2660038 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Amo08g0149 DUF702 6.9e-61 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo08g0149 08 2658623 2660038 Amo17g2194 17 112766598 112777868 hybridization
Amo06g0720 06 10256326 10257552 Amo08g0149 08 2658623 2660038 PCT
Amo08g0149 08 2658623 2660038 Amo06g0720 06 10256326 10257552 PCT